Chiloscyllium plagiosum (whitespotted bambooshark): 122561858
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Entry
122561858 CDS
T08871
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122561858 (upf2)
03015 mRNA surveillance pathway
122561858 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122561858 (upf2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122561858 (upf2)
mRNA cycle factors
P-body specific factors
122561858 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122561858
NCBI-ProteinID:
XP_043570080
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All DBs
Position
23:complement(50911547..51011244)
Genome browser
AA seq
1300 aa
AA seq
DB search
MNEREKKGKRPSGEHKKSVSMEEKDATVFSNETRGSKDKESTDRRPVSSREKGRDELKAS
SRRETIKAAEEKKKRQEDEKRKKEDEKRKKKEEEKLKAEEEQRKKEEEEKKKLEEEERKK
QEEEEKRQREEAAAKQREMEEAYQLHQEAWERHQTRLELRSKNQIAHENRPEESFFTRLD
SSLKKNTAFVKKLRTITEQQRDTLSSDFNMLNLSKYIAEAVASIVEAKLKLSDVNCAVHL
CCLFHLRYADFSPLLLQGWRKHFEARKEEKTPNISKLRTDMRFIAELTICGIFTDKEGLS
LIYEQLKNIICADRETHTHVSVIISFCRHCGDDVASLVTRKMKLASEKYNLSFPPSEIIS
CEKQQPFMNLLREYFTSLTKHLKKDHRELQNLERQNRRILHSKGELSEDRHKQYEEFATS
YQKLLANTHSLADLLDENMPELPQDKTAQEEHGTGIDIFTPGKPGEYDLDGGIWEDEDAR
NFYENLIDLKAFVPAILFKDNEKNSQNKDSSKEDSKDSKDGRESKDGKESKELVATEELE
LELENLDINDEILDEEGTEETEDLSQKLLEEHEQDEEEASTGSHLKLIVDAFLQQLPNCV
NRDLIDKAAMDFCMNMNTKANRRKLVRALFTVPRQRLDLLPFYARLVGTLYPCMTDVAED
LCAMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFLKNDSLHCLKMLLADFSHHH
IEMACTLLETTGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPP
VEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLAWHDPEVKEYVINCMINIWNV
KYNSIHCVANLLAGLVPYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSVKFLGELY
NYRMVESAVIFRILYSFITFGVSADGSATPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSK
RKLDCFLVYFQRYIWWKKSLDVWTKDHPFPIDVDYMISDILELLRPKMKFCGSLEEAIKQ
VQELEREFLIKLGLVIDGKDSKSDKLSGLGEGEENQDDDDDDEEEEGGAETEEQSGNESE
MNEHEEEDASENEDDEEEEEENTDYLTDSNKENETDEDNNEVMIKGGGLKHLPCAEDEEF
IQALDKMMLENLQQRSGESVKVHQLDVAIPLQLKSQLKKGPPPQGGGEGDSENSETMQFV
MLTRRGNKQQFKILNVPMNSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEML
QSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaagggagaaaaaaggcaaaaggccatcaggagagcacaagaagtctgtgagc
atggaagaaaaagatgccacagttttcagcaatgagaccagaggcagtaaagacaaagaa
tctactgacagaaggcccgtctccagtagggagaaagggcgggatgaacttaaagcgagt
agcagaagggaaaccataaaagcagccgaggagaaaaagaagaggcaagaggatgaaaaa
cgcaaaaaggaggatgagaaacgaaagaaaaaggaagaggagaagttaaaagcagaggaa
gaacaaaggaagaaggaagaggaagaaaagaagaaactagaagaggaggaaaggaagaaa
caggaggaggaggaaaaaaggcagagagaagaagcagcagctaagcagagagagatggag
gaagcgtatcagttgcatcaagaggcctgggaacgtcatcaaacaagattagaactccgt
agtaagaatcaaatagcgcatgagaaccgtccagaggagagtttctttaccaggctggac
tccagcctaaagaaaaatactgcatttgtcaagaagctcagaactattactgagcagcaa
agagacacactttccagcgatttcaatatgctcaatttgagcaagtatattgcggaagct
gttgcatccatagtagaagccaaactgaaattatctgatgtgaactgtgctgttcacctt
tgctgcctgtttcacttgcgatacgctgacttttcaccattgctcctacaaggctggaga
aagcactttgaagccaggaaggaagaaaaaactccaaacattagcaagctgaggactgac
atgcgcttcattgcagaactgacgatttgtggaatcttcactgacaaagaaggcttgtca
ctcatctatgagcaactgaagaatatcatttgtgccgatcgtgaaactcacactcatgtc
tctgtgattatcagcttttgtcgccactgtggagatgatgtggccagtctggtgaccagg
aagatgaagcttgcctccgagaaatacaacctgagcttccctcccagtgagatcatcagc
tgtgagaagcagcagcccttcatgaacctgttgagggagtactttacctctctgaccaaa
catcttaaaaaagatcatcgtgaattacagaatctggagagacagaacaggcgaatttta
cattcaaaaggagaactgagtgaagaccggcacaagcagtatgaggaatttgctacctcc
tatcagaagttgttagcgaacacacacagtctggctgacttgttggatgagaacatgcct
gaacttccccaggataaaactgcacaggaagaacatggcactggcatagacatcttcaca
ccagggaagcctggagaatatgacctcgatggaggaatttgggaggatgaagatgcacgc
aacttctatgaaaacctaattgacctgaaagcatttgtacctgccatattgtttaaagat
aatgagaagaattcgcagaacaaagattcgagtaaagaagattcaaaagattccaaagat
ggaagagagtccaaagatgggaaagaatccaaagagttggttgctacagaggaattggaa
ctagaactagagaatctggacattaatgatgaaatattagatgaagaaggaacagaagaa
acagaagacctcagtcaaaaactgctagaggagcatgagcaagatgaagaagaagccagc
actggttctcatctgaaactaatcgtggatgctttcctacagcagctgcctaactgtgtc
aaccgggaccttatagacaaggctgcaatggatttctgcatgaacatgaatacgaaagcc
aatcgaaggaagttggtccgagccctgttcactgtgcctcggcagaggttggacttactt
ccattttatgcccgtttggttggcactttatatccatgtatgacggatgtggcagaagac
ctttgtgccatgttaaaaggagacttcagattccatgtcaggaagaaggatcagatcaat
attgaaactaaaaacaaaactgtacggttcatcggagaattaacaaagtttaaaatgttc
ttgaagaacgactcacttcattgtctaaagatgctcttggctgatttttcccaccaccat
attgaaatggcctgcacactcctggagacaactggtcgttttcttttccggtcacctgat
tcccatttgaggacaagtgttcttttggagcaaatgatgcgcaagaaacaagcaatgcat
ttagatgctcgttatgttacaatggtggaaaatgcatactattactgtaatccgccccct
gtcgagaaaacagtgaggaagaagcgccctccccttcaagaatatatccgcaaacttctt
tacaaggacttgtccaaggtcacgactgaaaaggtgttgagacagatgcggaaattggca
tggcatgatccagaggtgaaggaatatgttattaattgcatgatcaacatctggaatgtc
aaatataacagtattcactgtgttgctaacctattggcgggtttagtgccataccaagaa
gatgtgggaattcacgttgtggatggagtgctggaagacatccgtctgggaatggaggtc
aatcaacccaagttcaaccagaggcgtattagcagtgttaagttccttggggaattgtac
aattacaggatggtggaatctgcagtcatcttccgaattttgtattcctttattacattt
ggtgtaagcgctgatggcagtgcgacacctctggatccaccagagcatttattccgtatt
cgactagtttgtacactgctggacacttgtgggcagtactttgacagaggttccagcaaa
cggaagttggactgttttcttgtatattttcagcgttatatctggtggaagaagagttta
gatgtgtggacgaaagatcaccctttccctattgatgtcgactatatgattagtgacata
cttgagctgcttcgaccaaagatgaaattctgtggctcccttgaagaggccataaaacag
gttcaggaactcgaacgcgagttcttgattaaactaggtcttgtaattgatgggaaagat
tccaagtcggacaaattatctggtctgggggaaggggaagaaaatcaggatgatgatgac
gatgatgaggaggaagagggtggagcagaaacagaggaacagtctgggaatgaaagtgaa
atgaatgaacatgaagaagaggatgcttctgagaatgaagatgatgaagaagaggaggag
gaaaatacagattacttgactgactccaataaggaaaatgaaactgatgaggacaacaat
gaggtgatgatcaagggcggaggcttaaagcatcttccttgtgcagaagatgaagaattc
attcaagcattggataaaatgatgctcgaaaatctgcagcagcgatctggcgagtctgtc
aaagtgcaccagttagatgtggctattccactgcaactaaaaagccaactgaagaaaggt
cctccaccccaaggaggaggagaaggcgattcagaaaattcagaaaccatgcagtttgtg
atgctcaccagaagagggaacaaacaacagtttaaaatactgaacgtaccaatgaattcg
cagcttgctgcaaatcactggaatcagcaacaggcagaacaagaagaaagaatgcgtatg
aagaagctgacgctcgatattaatgaacggcaagaacaggaagattaccaggagatgtta
caatccctggcacagcgtccagctccagcaaataccaatcgtgagcgtcgaccacggtat
cagcatccgaaaggagcaccaaatgctgatctcatcttcaagacaggggggaggcgacgt
tga
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