Chiloscyllium plagiosum (whitespotted bambooshark): 122562595
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Entry
122562595 CDS
T08871
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122562595 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122562595 (polr1a)
Enzymes [BR:
cpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122562595 (polr1a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122562595 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
Methyltransf_4
Motif
Other DBs
NCBI-GeneID:
122562595
NCBI-ProteinID:
XP_043571909
LinkDB
All DBs
Position
1:24068124..24197614
Genome browser
AA seq
1376 aa
AA seq
DB search
MLIGKEIPWRRLESISFNVYSTEDIRKLSVKAITNPYFLDNVGNPAANGLYDLALGPADS
KEVCGTCAQDYNNCPGHIGHINLPLTVYNPLFFDKLYLLIRGSCLNCHFLTCPRAMMYLL
LNQLKVIDVGAIEAVYELENVLNKVLEENSNATVDEIQTALNEHTLIILNNRMNDKVSRV
KNVSDCKDKLIGDFWKNQMKSRKCPNCQAGKSVVRKEHNSKLIVTYPTIALKVKENEDTA
EAVEDSGGLDDLLLGKRGFLTPTTARDHMLALWKNDGFFLKYLFPGLRIHGNTKSSWNLD
MFFLDVLVVPPSRFRPVNRLGDQMFTNGQTVNLQAVMKDVQVIHKLLALMAQEQIKTVQS
IYTEEISAIPVPEDKTPTRMDLAFLAGIPGQTLTDKLYSAWIHLQSHVNIVFDSDMDKLI
TDKFPGVRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQ
PVTPWNVQELRQAVLNGPNAHPGASMVINEDGSRTILSASNPTQREAIAKQLLTPSTGEQ
SLGMKIVCRHIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDG
DEMNAHFPQNELGRAEAYVIASTDEQYLVPKDGKPLAGLIQDHMVSGTSMTIRGRFFTRE
QYMELVYRGLTDKKGRVKILQPAVLKPYPLWTGKQVVSTLLINIIPKDQMPLNLIGISKI
SGKAWVREAQRMVATFGLEWMSESKVVILEGELLCGVLDKAHYGSSAYGLVHCCQELYGG
ETSGKVLTCLARLFTAYLQLYRGFTLDVEDILLKPKANAKRQKIIEESTQCGAKAVRKAF
NLPESASCDEVQDKWQNAHLSKDPKDINVVDLKYKEEVNLYNNQINKSSSPKRRMRKFHL
DYNQFKNLTGPFSSFLSLKELLYLKWQRALCEPGEAVGLLAAQSIGEPSTQMTLNTFHFA
GRGEMNVTLGIPRLREILMVASANIKTPMMSIPVLNSKKALKKVKKLKKQLARVCLSEVL
HKIEVKDSFQVQGTLEKFRIYRITFHFLAYNLYRQEKCLTPDDLLHYMETRFFQLLLDGI
KKKSAKLGSFKAVNVRKATQKDLDQDSGESDGKQAEDDHDLQGEAEAPIIDAEAEEGDAD
ATEAKRREKQEEEIDYDSEGEEAGDNADEPEEKEDDDFPSSEQNEVTDQNLLECPYNFTK
VTKEKRRRKQTITETMDELRVNAVLNLHSAIEDYKYDVADSLWCEVRCETLDLNRLYSND
IHAFANTYGIEAALRVIEKEIKDVFSVYGIQVDPRHLSLVADYMCFDGSYKPFNRIGMQS
SSSPLQQMTFETSYKFLKHATMLGSQDELKSPSACLVVGKVVRGGTGLFDLKQPLR
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgctaattgggaaggagattccgtggagacgtttggaaagtatctcgttcaacgtctat
tccacagaagatatcaggaagctgagcgtaaaagcaatcacgaatccttatttcctggat
aatgtgggcaatccagcagcgaatggtctttacgatttggcattaggtccagctgattcg
aaggaagtatgtggtacctgtgcgcaagattataataattgccctggacacattggccat
ataaatctcccattaactgtctataatccgctattttttgataaactgtatctgttgata
agaggctcctgtttgaattgccatttcctgacatgcccccgtgcaatgatgtacctgctg
ctaaatcagttgaaagttatagatgtcggagccattgaagctgtttatgagttggagaat
gtactgaataaggtgctggaggaaaattcaaatgccactgtggatgaaatccagactgca
ctgaatgaacatactttaattattctgaacaatcgtatgaatgacaaagtttcccgggta
aaaaatgtgagtgactgcaaagataaattgataggcgatttctggaaaaatcagatgaaa
tcaaggaagtgtccaaactgccaagctggcaaatcagttgtgcggaaagaacacaacagc
aaactaattgtgacatatcccacaattgctctgaaagtcaaagagaatgaagatacagct
gaggctgtggaagacagtggaggtcttgatgatttgctgttaggaaaacgaggatttctg
actcccactactgcaagagaccacatgttggcactgtggaaaaatgatggcttcttcctg
aaatatctatttcctggcttgagaatacatgggaatacaaagtccagctggaatcttgac
atgttttttctggatgtacttgttgtacctccttccagatttcgtccagtcaatcgactg
ggagaccagatgttcaccaatggtcaaacggttaatctgcaagctgtgatgaaagatgtt
caagtgatacacaagcttctggctctaatggcacaggagcaaatcaagacagtgcaatcc
atttacacagaggagatatcagcgatacctgttccagaagacaagacaccaaccaggatg
gaccttgcctttttagctggtattcctggacagacattgacagataaactctacagtgcc
tggatacaccttcaaagccatgtcaacattgtttttgacagtgatatggacaagctgatt
acagacaagtttccgggtgtccgtcagatcctggagaagaaggacggtctcttccgtaaa
cacatgatgggaaaacgtgtggattatgcagctcgttcagtcatctgccctgacatgtac
atcaataccaatgagattggtattccaatggtttttgctacaaagctaacctatcctcag
ccagtgacaccatggaatgtgcaggagctgaggcaagcagtattaaatgggccgaatgca
catcctggggcttctatggtaattaatgaagatgggtctcgtactattctgagtgcatca
aacccaacccagagagaagccattgccaaacaactgttaacaccaagcactggcgaacag
agcttaggcatgaaaattgtgtgccggcatattaagaacggagatgttctgttgctgaac
cgtcaacctactttgcacaggccgtccatccaggcccaccgggcccggatcctaccagga
gagaaggtcctgcggcttcactatgcgaactgtaaagcctacaatgctgattttgatggg
gatgaaatgaatgcacactttccacagaatgaacttggccgagcagaggcttatgtaatt
gctagtactgacgaacagtatttggttcccaaggatgggaagcctttggcaggtttaatt
caggatcacatggtttctggcaccagcatgacaatccgtggccgtttcttcacacgggaa
cagtacatggagcttgtttaccgaggccttacagataaaaagggccgggtgaagattctt
caacctgctgtgcttaaaccgtatccactttggactggaaagcaggttgtttcaacgctg
ctgattaatataattcccaaggatcaaatgccattgaacttgatagggatatctaaaatc
agtggcaaggcttgggttagagaagctcagcgcatggtggcgacctttggtctggagtgg
atgtctgagtccaaggttgtcattctggaaggagagttgctgtgtggtgttctggacaag
gcacattatggaagctcagcctatggcttggtccactgctgtcaggaactgtatggtggt
gagacaagtggaaaagtactgacctgtctggctcgcctctttactgcttacctccagctg
tataggggatttactttagatgttgaagatattctattgaagcccaaggcaaatgcgaag
aggcaaaaaatcattgaagagtcaactcaatgtggagccaaggctgtccgaaaagctttt
aacttaccagagagtgcctcatgtgatgaagttcaggacaaatggcaaaatgctcatctc
agtaaagatcccaaggacataaatgtggtggatttgaaatataaggaagaagtgaatttg
tacaacaaccaaatcaacaagtccagtagtcccaagcgcaggatgaggaagttccatttg
gattataatcagtttaaaaacttgactgggcctttctcttcttttcttagtttaaaggag
ctgttgtatctcaagtggcaacgagctctatgtgagccaggagaggccgtagggctcctt
gctgcacaaagtattggagaaccatcaacacagatgacactgaacactttccattttgct
ggccgaggagagatgaatgtcacattgggtatccccaggttgcgtgaaattctcatggtg
gcgagtgctaacattaaaactccaatgatgagcattcctgttttgaactcaaagaaagca
ttgaagaaggttaaaaaactgaaaaagcagctcgcaagggtgtgtttgtcagaggtttta
cacaaaattgaggtaaaagattctttccaggttcaaggcacgctggagaagttcagaatt
taccgaataacatttcatttcctggcttacaatctgtaccgacaagagaaatgtttgaca
ccagatgacttattgcactacatggaaacaaggttttttcaactgctgcttgatggcatc
aaaaagaaaagtgccaagctgggttcatttaaagctgtcaatgtccggaaggccacacag
aaggatcttgatcaggactctggagagagtgatgggaagcaggcagaagatgaccatgac
cttcaaggcgaagctgaggccccaatcattgatgcagaagcagaagaaggagatgcagac
gcaacagaagctaaaaggcgtgaaaaacaggaggaggagattgattatgacagcgaagga
gaagaggctggagataatgcagatgaaccagaagagaaagaagatgatgattttccatct
agtgagcaaaatgaagtcacagaccaaaaccttttggaatgtccctataatttcaccaag
gtcaccaaagaaaagaggagaagaaagcaaactatcacagagaccatggatgagctgaga
gtgaatgcagttttgaatttacattctgctattgaagattataaatatgatgtagctgac
agtctttggtgtgaggtaagatgtgaaactttggatctcaatcgtttatattcaaacgac
atccatgcctttgccaacacatatggtattgaagctgctctaagagtcatagagaaagaa
ataaaagatgtcttttctgtatatggcattcaagtggatcctcgccatctttctcttgtg
gcagattacatgtgttttgatggttcatacaaaccatttaatcgaattggcatgcagtca
agctcctcgccccttcagcagatgacctttgaaaccagctataagttcttaaaacatgca
accatgctcggttctcaggatgaattgaagtctccatcagcctgcctggtggtggggaaa
gtagtccgtggtggcactggcctttttgacctgaagcagcctcttagatga
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