Chiloscyllium plagiosum (whitespotted bambooshark): 122562734
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Entry
122562734 CDS
T08871
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122562734
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
122562734
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
122562734
NCBI-ProteinID:
XP_043571792
LinkDB
All DBs
Position
25:complement(34458343..34694810)
Genome browser
AA seq
2224 aa
AA seq
DB search
MTAANWVANGASLEDCHSNLFSLAELTGIKWRRYSFQGLGGCGPIISAPAQDDPILQTFI
RCLQANLLCVWRRDVRPEAKELWIYWWGEEPNLVDIIHHELRVVEDGLWENGLTYECRTL
LFKAIHNLLERCLMDKNFVRIGKWFVKPYEKNEKPVNKSEHLSCSFTFFLHGESNVCTSV
EIAQHQPVYLVNEEHINMALSSASPFQVIISPFGLNGTLTGQTYKMSDPATRKLIEEWQY
FYPMVLKKKETKEEEEMDCDDDFPVAVEVIVGGVRMVYPSAFVLIPQGDIPVVSNAANAG
GHTNPTQGSVSVKDTLSCGLPLTPPTSPEQAIIAGDGIAPTVTGQMSGQEGVATASSPKH
TGRIPQKVTNQMVQNVWKECNVNKTQLKRHSTSENSEEEMASNAASWDFTEPGQRVNCSC
SRQKLLKQRSTTGANRPPPISQPGFNAGLPSASSLPSSASSKHKTNEKQEKGDKQQKRPM
TPFHHRPSLTDELCMEQDPTGQKLGLVGIDVSLEMHSSRKYGKPASGHPGNQSKPLNLNP
MDSPHSPISPLPPTLSPQPRGPEAEGLEGAPEPINPLLYSNGLELQAIPSLDDKTGLLSQ
RLPPVPEVSETTLYSGITAQNLESSDRISWQCYKTPTHVEGEFRPPELHCDRCDNKIDNP
DGSALRRLLAQPHKRFKVSEERIQMQIQEMNYLDPTRLIQQHNEGPGELNDPYTFVDGDI
EYSFTSIKKSKLGSEKDTSKKSQPNKLEDGFGTREAPSSHAAQLPDGKDAMSIFNTAPKS
ETRQSPTGRIVPASLTRETDLVVSLNDLDNLFDNSDDEENGTSSPTRSKQANAGSEDKAV
GKDVKTTGPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGVNSEMPAGMSSMENPVGT
MTAAQFTEFKMQVEDRLGSPKPEEITDFSYVHKPPKAKAFVGSSMFAPLKAVPSQCLAPL
KIPDACIYRPSWAIPPKIEQLPVPPPASLNRDGYVNVPSVGSLTEDYIQMSTPQMSTPLA
VSSTAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTASGQGSVKYDSADMCSPA
STPSTTRPLNSVEPATIQSIPQAHSLYVTLILSDSVMNFFKDRNFDSCCICVCNMNIKGA
DVGLYIPDPTNEAQFGCTCGFSAVVNRRLGYNAGLFLEDEFDIFGRTSEIGQAAERRLIL
CRNSVVPQGFDGSKRLQDLTANLIFLVQDQCTGPFTSLSSLDYISLDRSALQSANWNYDK
LRADSSDSCTECFNALEQGRQYVDNPSGGRIDEALIRSRSLHPWPNSNVLDISILSSQDV
VRMLLSLQPFLQDAIQKKRTGRTWDNIQHVQGPLTWQQFHKIGRGSYGSEESPEPLPIPT
LLLGYDKDFLMISPFALPFWEKLLLEPYGSQRDVAYIVVCPENEALLTGAKNFFRDLSAV
YETCRLGEHRPICKVLRDGIMRVGKSSAKKLADESVDEWFSQAWVSDENDNLAKLKLYAQ
VCRHHLAPYLATLQLDNSLLIPPKHQPTSSSGTQGQATTGSAGPSLGTGVTSAPVTTGTT
ATATTSTGSSNATTGSTGVGSGSTGTCSTSTTSTTTTTTTPVLHQTGTIPSSSGFGGTVG
AAQVQSGSSGTSTERPPANTPSGSGDSDAQSSAQQQEVQESTTERERIGIPTEAESADSN
AYPPAVVIYLVDPFTYSSEDESSFTSGWLLGLLRCYMEMLDNLPEHMRNAFTVQIVPCQY
LLQPVKDDHTFYIQHLKSLAFSVYTQCRRPLPTQIHIKSLTGFGPASTIDMTLKHSERPH
PIQVYSPPYILAPIKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELL
ETCILNIDVPNRSRRSKVPARKIGLQKLWEWCVGIMQMTSLPWRIVMGRLGRVGHGELKD
WSILIGRRSLQSTSKQLKETCTMCGISAADSPTILSACLVALEPQGSFVVMPDAVTMGSV
FGRGTALNLQTSQLNTPQDASCTHILVFPTSAATVVANTEALEALGNQDGIGILEEDIFA
EDFDNDIRILITGNLHPSPTSSPVLSPGSPTGTGAGSHFQHSSEAGRGQGGERLLSTEAH
EEVANVLQQPLALGYFVSTAKAENLPQWFWSACPHAQNQCPLFLKASLHHHVSLAQSDEL
LPGKHSHPHPLDSNRTSDVLRFVLEQYNALSWLNCNPATQDRQSCLPVHFVVLTQMYNAI
MNLL
NT seq
6675 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagcaaactgggtggccaacggtgctagcttggaggactgccattcgaattta
ttctctctggctgaactaactggcatcaaatggcgtaggtacagtttccagggtctaggg
ggctgtggtcccatcatctcagcaccagctcaggatgatcctattctgcagacttttatt
cgatgtctacaagccaatctgctatgtgtatggagacgagatgtgaggcccgaagccaag
gagttgtggatttactggtggggagaggaaccgaatttagttgatataattcatcatgaa
ttacgagtggtggaagatggtctctgggaaaatggacttacgtatgaatgccgaacactg
ctcttcaaagctattcacaatttgctagaaaggtgtctgatggataagaattttgttagg
attggaaagtggtttgtcaaaccctacgagaaaaatgagaagcctgtcaacaaaagtgaa
cacctttcctgttcctttaccttctttctgcatggagagagcaatgtctgcacaagtgtt
gaaattgcccaacatcaacctgtgtaccttgtcaatgaagagcacatcaacatggcacta
tcatcagcctcacctttccaagtcatcattagtccgtttgggctgaatggcacacttaca
ggccagacatacaagatgtctgatccagctacaaggaaattgattgaagaatggcaatac
ttctatccaatggtactgaaaaagaaagaaacaaaggaggaagaagagatggattgtgat
gatgacttccctgtagctgttgaggttattgtaggtggagtgagaatggtatacccatca
gctttcgtgttgattcctcagggggatatccctgtagtttcaaatgctgctaatgcagga
ggccatacaaatccaacacaaggatcagtaagtgtgaaggacaccttaagttgtggattg
ccactcacaccacccacctctcctgagcaggccataatagcaggtgatgggattgcaccg
actgtgactggtcaaatgagtggacaagaaggagtggcaactgcatcaagcccaaaacac
actggtcgaattcctcagaaagtaaccaatcagatggttcagaatgtctggaaagaatgc
aatgtgaacaaaacacaactgaaaagacattcaactagtgaaaattctgaggaagagatg
gccagcaatgctgcttcctgggattttacagagcctggccaaagagtgaattgttcttgt
tcaaggcaaaagcttctaaaacagcgaagtacaacgggcgcaaaccgccctccacccatc
tctcagcctggctttaatgctggtctcccttccgcttcttctttgccatcatctgcgtct
tctaagcacaaaacaaatgagaagcaggaaaagggagataagcagcagaagcgacctatg
actccatttcatcatcggccttcgttaactgatgagctttgcatggagcaagatccaaca
ggacagaagcttggattagttggtattgatgtctccttggaaatgcacagcagcaggaag
tatggcaagccagcatctggacatccaggaaaccagagcaagccactaaatttgaatcct
atggattctccacattctcccatctctccacttccaccaacgctcagcccccaaccgaga
ggtccagaagcagaaggtttggaaggtgctccggagcccattaatccattactatatagt
aatggtctagaacttcaggcgatccccagccttgatgataagactgggcttttatcacaa
agactaccaccagtgccggaggtcagcgagactactctatatagtggtatcactgcacaa
aatttggagtcatcggacagaatctcatggcagtgttataagactccaacccatgtagag
ggagagttcaggccaccagaactgcactgtgacagatgtgacaacaaaattgataatcca
gatggttcagcactaagacgacttctagcacagcctcataaacgattcaaagtttcagaa
gaaagaatacaaatgcaaatccaggaaatgaattatctggatccaactagacttatccag
cagcataatgaaggtcctggagaacttaatgacccttacacttttgtggatggtgatatt
gaatacagcttcacttcaattaagaagtcaaaacttggatctgagaaagatacatcaaag
aaatctcaaccgaacaagctcgaagatggatttggtacaagggaagctccatctagtcat
gctgcacagttgcctgatggaaaagatgccatgtctatttttaacactgctccaaaatca
gaaacacgacaatctccaacagggcggatagttcctgcaagcctcacacgagagactgac
ctagtggtatctttgaatgacctggacaatctttttgacaactctgatgatgaggaaaat
ggaacatcttccccaacacgctctaagcaagcaaatgcaggatcagaagacaaagctgtt
ggaaaagatgtgaagacaactgggccttatcctccaactgtcgcagatctgcaaagaatg
tttccaacccctccatctttggaacaacatccagcattttctccagtaatgaattacaaa
gatggtgttaattctgaaatgcctgcagggatgagtagcatggagaatccagttggtact
atgaccgcagctcaattcacagaattcaaaatgcaagtggaagatcgactgggcagtcct
aagcctgaagaaataacagatttttcttacgtgcacaagcccccaaaagctaaggctttt
gttgggtcttcaatgtttgcaccactaaaggccgtgcccagtcaatgccttgctccactg
aaaataccagatgcctgcatataccgaccgtcatgggctattcctccaaaaatcgaacaa
ttgcctgtaccaccacctgcttcactaaatcgggatggatatgtcaatgtgcctagtgtt
gggagtctgacagaagattatattcagatgagcactcctcaaatgagcacacctttggca
gtaagttctactgcacctgccagcaacagtggtgctggtgtgttgccatctcctgcaacc
cctcgcttctctgtcccaacacctcgtacaccaaggacaccacgaactccacggggtggg
ggcactgccagtgggcaaggatcagtgaagtatgatagtgctgatatgtgttcccctgct
tcaacaccttcaaccacacgaccattgaactccgtggagccagcaaccatacagtcaatt
ccccaggcacacagcttgtacgttacgctaatcctttcagattcggtgatgaatttcttc
aaagatcgcaacttcgatagctgctgtatctgtgtttgtaatatgaatatcaaaggggcg
gatgttggtttatacatcccagatccaaccaatgaagcccagtttggatgcacctgtgga
tttagtgctgtcgtaaaccgcagacttggatataatgcaggtctctttctcgaggatgaa
tttgatatttttgggaggacatcagagattggtcaagctgcagaaagacgattgatattg
tgtcggaattctgttgttcctcaaggatttgatgggtcgaagaggctacaagacctaaca
gcgaacttaatttttcttgtacaggatcagtgtacaggacctttcacttctctaagttct
ctggactacatttccttagatagatcagcacttcaatcagcaaattggaactatgacaag
ctgagagcagatagtagcgattcttgcacagagtgtttcaatgccctggagcagggtcga
caatatgtggataatccatctggtggaagaatagatgaagcactaattagaagcaggagt
ttacacccatggcccaatagtaatgttctggatattagcatcctttcatcccaggatgtg
gtccgcatgctgctgtcactgcagccttttctccaagatgccattcaaaagaaacggaca
ggaaggacatgggacaatatccagcatgtgcaaggacctctcacctggcaacaattccac
aagataggcagaggatcctatggttcagaagaatcaccagagccacttcccattcccaca
ctgcttctgggctatgataaagacttcctgatgatctctccttttgcactgcccttttgg
gagaagctgcttctcgaaccgtatggttctcagcgtgacgtagcctacattgtggtctgt
ccagaaaatgaggccttgctcactggagccaaaaatttcttcagggatcttagtgctgta
tatgagacatgcagacttggtgagcatagaccaatctgcaaagtattgagagatggaatt
atgcgggttggtaagagttctgcaaagaagttggcagatgaatctgttgatgaatggttc
tcccaagcgtgggttagcgatgaaaatgacaatcttgccaagttaaagctatatgctcaa
gtctgtcgccatcacttggcaccttacctggctacacttcagttggacaacagcctgctg
attccacctaaacaccagccaacatcatcttctggtacccaggggcaggcaacaactgga
agcgctgggccatcattgggaactggggttacttctgcaccagtgacaactggcaccaca
gctactgccacaaccagcactggcagtagcaatgcaacaactggcagcactggtgttgga
agtgggtcaacaggtacctgctccacttctactacctccactaccaccacaaccactact
ccagttttgcatcaaacaggtacaatcccatcctcttcaggatttggtgggactgttgga
gctgctcaggtgcagagtggtagctcaggcaccagtaccgagaggcctccagcaaataca
cccagtggcagtggagattcagatgcccagagttctgcacagcagcaagaagtgcaagag
agtaccacagaaagggaacggataggaattcctactgaagctgagtcggctgacagcaat
gcatatccaccagctgtcgtcatttatcttgttgatccttttacatattcctcagaagac
gagtcatcttttactagtggatggctgttaggcctgttaaggtgctacatggagatgctg
gataatctaccagagcatatgaggaatgcattcactgtccagattgtgccttgccagtat
ctactacaaccagtgaaagatgatcacactttctatatccagcacttaaaatcactggca
ttctcggtttacacacaatgtagacggccgcttcccacacagatccacattaaatcacta
actggctttggtcctgcttccacaatagatatgacccttaagcattcagagcgtccccat
cctatccaggtatattcgccaccttatatcttggcaccaattaaagacaaacaaacagag
ctaggtgagacatttggagaggcaagccagaaatacaacgtgctctttgttggttattgt
ttatcacatgatcagaggtggcttctagcatcatgtaccgaccttcacggggaattactg
gagacatgcatcctgaacattgatgtcccaaacaggtcaaggagaagtaaagtgcctgct
cgtaaaattggcttgcagaaactatgggaatggtgtgttggaattatgcagatgacatca
ctgccatggagaattgtaatggggagacttggaagagtaggtcatggagaactgaaagat
tggagtatcctaattgggcgacgctcgctacagtctaccagtaaacaattgaaggagact
tgcacaatgtgtggtatatctgcagcagattctcccacaattctcagtgcctgcttggtt
gccctggagccacagggttcatttgttgttatgcctgatgctgtcacaatgggttctgtg
tttgggcgtggtacagctctcaacttgcaaacatctcagttgaacaccccacaagatgca
tcctgtacgcacattctggtttttccaacatctgctgctacggttgttgccaatactgaa
gctttggaagctcttggtaaccaagatggtataggaattttggaagaggatatttttgct
gaagactttgacaatgacattcggatcctgataactggtaatcttcacccatctcccacg
tcttctcctgtactgtctcctggttcacctactggcacaggagcaggctctcattttcaa
cacagcagtgaagctggcaggggtcaaggaggtgaacgactcctctccacagaagctcat
gaggaagtagcgaatgtattgcagcaacctcttgctcttgggtactttgtttcaactgcc
aaagctgaaaatctccctcagtggttctggtctgcctgtccccatgcccaaaatcagtgc
ccgttgtttctaaaggcctcattacatcaccatgtctccttggcacaatctgatgaacta
cttcctggcaagcactctcatcctcaccctctggattccaatagaacttcagatgttttg
agatttgtactagaacagtataatgccttatcatggctcaactgcaaccctgccacacaa
gatcgccagtcctgtctacccgtccactttgtggtgcttactcaaatgtacaatgccatt
atgaatttactttga
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integrated database retrieval system
