Chiloscyllium plagiosum (whitespotted bambooshark): 122562741
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Entry
122562741 CDS
T08871
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030
DNA replication
cpla03410
Base excision repair
cpla03420
Nucleotide excision repair
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122562741 (rfc5)
03410 Base excision repair
122562741 (rfc5)
03420 Nucleotide excision repair
122562741 (rfc5)
03430 Mismatch repair
122562741 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122562741 (rfc5)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122562741 (rfc5)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122562741 (rfc5)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122562741 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
122562741 (rfc5)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122562741 (rfc5)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122562741 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
122562741 (rfc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_11
AAA_lid_RFC1
AAA_assoc_2
AAA_22
ResIII
AAA_14
RuvB_N
ATPase_2
DEAD
DUF815
AAA_24
AAA_16
AAA_5
AAA_19
nSTAND_NTPase5
PhoH
AAA_7
TniB
AAA_30
Thioredoxin_6
Mg_chelatase
DNAX_ATPase_lid
T2SSE
Motif
Other DBs
NCBI-GeneID:
122562741
NCBI-ProteinID:
XP_043571807
LinkDB
All DBs
Position
25:complement(35829138..35885482)
Genome browser
AA seq
333 aa
AA seq
DB search
MATGKEPKSRNLPWVEKYRPQSLDDLISHQDILNTIQRFISEDRFPHLLFYGPPGTGKTS
TILACAKRLYKDKELNSMVLELNASDDRGIDVVRGPILNFSSTRTIFKKGFKLVILDEAD
AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEQMIPRLEF
VIKEENVNITPDGLKAIVSLSNGDMRRSLNILQSTNMAYDKVSEETVYTCTGHPLKSDIA
NILDWMLNKDFTTAYRNIMELKTLKGLALHDILTEIHTFVHRVDLPPSVRIHLLIKMADI
EYRLASGTNEKIQLSSLIAAFQVARDMVVAEAE
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggaaggagccgaagagcagaaatcttccctgggtggaaaagtatcggccc
caatctctagatgatcttatttctcatcaggacatactcaatacaattcagcggttcatc
agtgaagatcgtttccctcacctgctattttatgggccgccaggaactgggaaaacatct
accatcttggcttgtgccaaacgactctacaaggacaaagagctaaactctatggtttta
gagctgaatgcctctgatgatcgaggtatcgatgtagtacgtggacctatattgaacttc
tccagcacaagaaccattttcaaaaaggggtttaagctcgttatcctagatgaggcggat
gcaatgactcaagatgctcagaatgctctcagaagggttattgagaaatttacagagaac
accagattttgcctaatctgtaactacctgtcgaagatcatccctgctttacagtctcga
tgtactagattccgatttgggccgctgtcaccagaacagatgattccaagattggagttt
gtcatcaaagaagaaaatgtcaacataactccagatggactgaaagccattgtgtcactt
tctaatggtgatatgcgtcgatctttgaatattttgcagagtacaaatatggcgtatgat
aaagtgagtgaggaaacagtgtacacctgtactggtcatccattaaaatcagacatcgca
aacatccttgactggatgttaaacaaagacttcaccactgcatacaggaatatcatggaa
ttaaagacattaaaaggtttagccctgcatgatattctgaccgagatccacacttttgtg
cacagagtcgatttgccaccttcggttcgaattcatttattgatcaagatggctgatatc
gagtacaggctggcttcaggaacaaatgagaaaattcaactgagttcacttattgctgca
tttcaagttgcccgtgatatggttgttgctgaagctgaatga
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integrated database retrieval system
