Chiloscyllium plagiosum (whitespotted bambooshark): 122563062
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Entry
122563062 CDS
T08871
Name
(RefSeq) transcription factor SOX-13-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122563062
Transcription factors [BR:
cpla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122563062
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Trehalose_PPase
Motif
Other DBs
NCBI-GeneID:
122563062
NCBI-ProteinID:
XP_043572359
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Position
26:8233616..8413644
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AA seq
653 aa
AA seq
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MIIFIFRMSTRQLASCCMDVNGDVIMVHDQVKVEEVEEERSGYGSLSMSFPSNPHSDRLP
SKAAPGRDTSDFKRSGVVKQTHASSSPREEGQQDHSKFTNTLSNLERIDFSKNLTEVMPS
IEKLLSSDWKDKLLEKCTLSSKDIKGTAESLAEKELQLLVMINQLSSLREQLLTAHAEQK
NMAAMLFEKQQQQMELARQQQDQIARQQQQLIQQQHKINLLQQQIQQVNLPFVMIPAFPH
SPQPLPVTSDPQLSLQMQPGLSCKPNDYALQLMPTPPAARRTPGLSPAHTHEEASQPLNL
TSKTKGTDTSKSPSPPQAKLRRGPSPSSFVIPAELQSSTPTSLLTREMISKDVFWRNHWG
YAIEQDTIGKVMQSPKQIFLGKSRAVDGPAVNNSRKDKDSRVTESSLVKQGDDGKAASGN
EDFNSCNDSEGNLTLAGSKGYETRGGSNHEHIKRPMNAFMVWAKDERRKILQTYPDMHNS
SISKILGSRWKSMSNIEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVDGKRLRVGE
YKALMKYRRQEVQQCYSAGQQDQVHLHPSDMMYPGQIGMTSIPVQPAVSEHYRPCSPDPN
MPVILNTRSLKSEQADTKEAQLSDANGEMYEYGEEDDSDVEYRSDGELVVLAD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgatcatatttattttcagaatgtccacacggcagctggcttcttgttgtatggacgtg
aatggtgacgtaatcatggtccatgaccaggtgaaagtggaggaggtggaggaggaacgg
agtggttacgggtcactcagtatgtcatttcccagcaatcctcactccgacaggctcccg
agcaaggcagcgcccgggagagatacctcggacttcaagaggtcaggggtcgtgaagcaa
acgcacgcttcgtcttcaccaagggaggaggggcaacaggatcacagtaaattcacaaat
accctaagcaacttggaaagaatagattttagtaagaatctaactgaagtcatgccgagt
attgagaagctgctgtccagtgattggaaagacaagctcctggagaaatgcaccttgagc
agcaaggacatcaaaggaacagcggagagtctggcggagaaggaattgcagctgttggtg
atgataaaccagctgtcaagtctccgagagcagctgctgacagctcatgcagaacagaag
aacatggcagccatgttgtttgagaaacagcagcaacagatggaattggctcgacagcaa
caggatcagatagccaggcagcagcagcaactcattcaacaacagcacaaaattaatctc
ctgcaacagcagatccagcaagtcaacctgccttttgtgatgattccagcatttccccac
agtccgcagcctcttccagtcaccagcgatccccagctgagccttcagatgcagccagga
ctgtcatgcaagccaaatgactatgctctgcagctgatgccaacccctccagcagccagg
aggacaccaggactaagccctgcccatacacatgaggaggcttctcagccattgaatttg
acgtcgaaaactaaaggtacagacacgtcaaaatccccctcacctccgcaggctaaactc
agaagaggaccctccccatcaagctttgtgatcccagcagagttacaatccagcacacca
acctccttgttaactagagaaatgataagtaaagacgttttctggaggaatcactggggt
tatgccattgagcaggacaccatcgggaaggtcatgcagagtccaaagcagatctttctc
gggaagagtcgggctgtggatggtccagctgtaaataatagcaggaaagacaaggattcg
agagttacagagtcatctcttgtgaaacaaggagatgacgggaaagcagcgagtgggaac
gaagattttaacagctgcaatgactctgaaggaaacctgactctggcaggatcaaaaggc
tacgagaccagaggtggcagcaaccatgaacacatcaagcgaccaatgaatgccttcatg
gtatgggccaaggatgagcgacggaagattcttcagacttatcctgatatgcacaactcc
agcatcagcaagatcttggggtcccgttggaaatcgatgtcaaacatcgagaagcagccg
tactatgaggagcaagcaaggttgagtcgacaacacttggagaaatatccagattacaag
tacaagccacgacccaaaaggacctgcattgtggatgggaagaggctgcgggtcggggaa
tacaaggcattgatgaagtacagacggcaggaggtgcagcagtgttactctgctgggcaa
caggaccaagttcacttgcacccgtcagacatgatgtatcccggacagattgggatgaca
tcgattcccgtacagccggcagtgtcggaacactatcgaccctgcagccctgatcccaac
atgcccgtaatcctcaacacacgaagtctcaaatccgaacaggcagacacgaaggaagca
caactaagcgatgccaatggcgagatgtacgagtacggtgaagaggacgactcggatgtt
gaatatcgcagcgatggcgagctggtggtcctcgcagactag
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