Chiloscyllium plagiosum (whitespotted bambooshark): 122563394
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Entry
122563394 CDS
T08871
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain
KO
K24339
collagen type XVI alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122563394
NCBI-ProteinID:
XP_043573068
LinkDB
All DBs
Position
27:complement(45921614..46279284)
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AA seq
1614 aa
AA seq
DB search
MWTIWITILWVFVSVQTVTGGRVKKHRDIPCPRVHGDGWKLQNQEHYANVSGFNLLRRFS
LFKTPAVKKVRSPTGSLIVKLGSLSLIRPTELVFPQGLPQDFTFLATMLLKKKKVKENWY
MIKITDQQGLTQFSIRIDGRDKAVEYKAKGRFQDYVRWVFSSEGVAALFDLHWHKLVISV
QANVASLYIDCQLIEIKSVEERADINTEGQTVMSRIAEDNKPAEVDLQQMILFCDPLMAE
KLTCCEIPGVKCATGSLVLKSRRNAEVKTTKSQIVPLPQMSGKVHTKCFCIDEDTKSKAG
KAGQGDENNEECKSCIQREPGQNEASGIVKQKHEGCVVCPEGHKGEKGEPGIIEGALGPR
PMKSEKGQKGEPGLQGSAGLPGRDGKPGELCVAGPKGAKGDPGPVGPEGLAGEPGSPGPP
GPPGIGIPGKPGKPGGPPGPKGEAGNDGDPGPEGIPGKPGKPGLPGPKGEKGDQCGICPT
HLEGQGGVKFTGDHSQGAKPGAPGRLGMSGPPGTQGEKGDTGDPGVKGEKGDSCKICPEL
TDELGNIVGIPGPPGPKGDPGTPGVQDPGPHGQPGAPGPRGFKGEKGNVGKPGASGKTGK
RGNQGIPGHEGEKGNKGDLGDRGITGAPGPKGEKGDGCGLCPTAQVAHLKVSPPDDGNGS
QSEKQPAPLIQPGIKGDPGSKGDKGEPGEKGIPGIPGFPGTRGRHGLKGEKGDQCEVCPT
IPEDFKDVIGLPGKPGPQGDPGPPGTGEPGKHGEPGRQGLTGSPGVKGEKGQAGPPGKGL
PGVPGKDGMMGKPGNPGAAGIPGQPGAVGPKGNKGQAGEHGIPGHPGAPGVGVPGIRGKD
GETGDTGLPGRRGLPGVPGAKGEKGAAAEQCVCINGQPIPGGDVRYPGDSGEHGHPGAPG
DRMLWSLGPLGPPGPPGPPGLPGPPGLPGLPGGNGRQGIPGNDGMPGAPGLPGMSPLSLF
AERNDSFFKTFCGNCTSGFPGAQAFTGMKVEQIEHGTPGAAGVDHCEKCKQQRQQQSQEE
LPRMEEQLPNNRDCGYPGLPGMPGPPGERGVKGDQGPPGQRGYAGPPGPPGPPGFPGGPG
TSGLPGLQGERGAPGLAGQKGEQGPIGPAGYPGSSGMPGLSGLKGERGYSGPPGEKGESG
PPGIPGPQGPSGPVGPKGGTGLPGSRGEKGDQGPIGFPGKSGPPGPPGPSGEKGNDGSVG
PVGPTGPPGRTGPPGQQGPPGVEGLDGKEGKPGPRGETGPPGPPGLRGLHGFKGKSGLPG
QPGQRGEPGVAGPPGNTGRPGFEGEPGPPGPVGPPGLPGHVGAAGVPGSPGPAGPPGVGT
KGDRGTSGERGLPGLVGPPGPPGAPGLMGEPGQDGSVGKEGSPGAPGLAGQPGPKGEPGK
PGEKGAQGDRGPPGIYGGYSGKSSSVAMPGPPGSPGERGSPGPPGPAGLPGMPGTPGTPG
TAADAVNFDEIKRLIRQEVTKIFDERMAYYLARIRTPDSTSQGRPGPPGKIGPPGHPGQP
GQSGLPGQPGRDGRSGLPGPKGPSGQKGDRGENGIGRVGEPGPPGPAGPPGRPGYGKIGP
PGPVGQQGVPGVPGPPGLQGTSGKNGRCTPSDCIMRVPEPYNAKNSKGPSHWMN
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgtggactatttggatcaccatcctgtgggtattcgtcagtgttcagacagtgaccgga
ggcagagtgaaaaaacacagagatattccatgccctcgtgtacatggtgatggatggaaa
ttacagaaccaggagcactatgctaatgtttcaggttttaatttgctcaggaggttctcg
ctttttaagacaccagcagtgaagaaagttcgaagtccaacgggttctttaatcgtgaag
ttgggaagtttatcactcatcagacccactgaactggtgttccctcagggcctgccacag
gatttcaccttccttgcaacaatgctgctgaaaaagaagaaagtgaaggagaattggtac
atgatcaaaatcactgatcagcaaggcctgactcagttttccattcgaatcgacggaagg
gacaaagcggtggagtacaaggccaaaggtcgtttccaggactacgtgcgctgggtgttc
agcagtgaaggagtggctgctctatttgatcttcattggcacaaactagtgatcagtgtg
caggcaaatgtggcctccctctatattgactgtcagctgatcgagatcaaatcggtggag
gagagagctgacattaacactgagggtcagacggtcatgagcaggatcgctgaggacaac
aagccagctgaagtcgacctacaacagatgatcctgttctgtgaccctctcatggcagag
aagctaacctgttgtgagatcccaggagtcaagtgtgcaacagggtcactcgttctgaag
agtaggaggaatgctgaagtgaagacaaccaagagtcagattgtacctctacctcagatg
agcgggaaagtccacaccaagtgcttctgcattgatgaggacacaaagtcaaaggctggt
aaagctggacaaggagacgagaacaatgaagagtgtaagtcctgcatccaaagggaacct
ggccagaatgaagccagcggaattgtcaagcagaagcatgaaggctgtgttgtgtgtccg
gaagggcataagggagagaagggggagccgggaattatcgaaggagccttgggaccaagg
cctatgaagtcagagaaaggtcaaaagggtgaaccagggttgcagggatcagctggtctg
cccggaagagacggaaaaccgggagagttgtgcgtggctggaccaaaaggtgcaaaggga
gatcccggaccagttggaccagagggattggcgggtgagccaggatccccagggcctcca
ggacccccagggataggaataccaggaaaaccggggaaacctggtggcccacccggacca
aaaggagaagcaggaaatgatggggatcctggcccagaaggcatcccgggaaaacctggt
aaacctggattaccagggccaaagggagaaaagggtgatcaatgtgggatttgtccgaca
catctagagggacaaggaggtgtcaaatttacaggagaccacagtcaaggagcaaaacct
ggagcacctggaagattgggcatgtctggacctccaggaacacagggtgagaagggcgat
acaggagatcctggtgtgaagggagagaagggcgattcatgcaagatatgtccagaactc
actgacgagcttggaaacattgtgggaatccccggaccacctggccctaaaggtgaccca
ggaaccccgggagttcaagaccctggaccacatggccagcccggagcaccaggtccacgt
ggcttcaagggagaaaagggtaacgtcggcaaaccaggagcctctgggaaaaccgggaaa
cgaggtaatcaggggatcccagggcatgaaggagaaaagggcaacaagggtgatctggga
gatcgagggatcacaggagctccaggacccaaaggagagaagggcgatggatgtgggctc
tgtccaacggctcaagtggctcatcttaaagtaagtcccccagatgatggaaatgggagc
cagtccgaaaaacagcctgcacctcttatccagcctggaataaagggtgacccaggatca
aagggtgacaaaggagagccaggggagaaaggaattccgggtattcctggattcccaggg
acacggggccgtcatgggctgaaaggggaaaagggggatcagtgtgaggtttgccctacc
attccagaagacttcaaagacgtaattggacttccagggaaaccaggccctcaaggagac
cctggaccaccagggacaggagaacccggaaagcatggtgaaccaggacgacagggattg
acgggctctccgggagtgaagggtgaaaagggacaggcaggacccccagggaaaggactg
cccggagttccgggaaaggatggcatgatgggaaaaccaggaaatccgggtgcagcagga
attccaggacaaccaggagctgttgggccaaagggtaacaagggacaagctggagaacat
gggatcccagggcacccaggagcccctggtgtgggggtacctgggatacggggaaaagat
ggagaaaccggagatacagggttaccagggagacgaggcctgccaggtgtgccaggagct
aaaggtgaaaagggagcagcagctgagcaatgcgtctgtatcaatgggcaaccaatccca
ggaggagatgtgcggtatcctggagattctggagaacatggccacccaggtgctccgggt
gatcggatgttgtggtctctgggacctctgggcccgccaggaccaccaggcccaccaggt
ctgccaggaccacccggcctgccagggttaccgggaggtaacggccgacagggaattcca
ggaaatgatggcatgcctggtgcacctggacttccaggaatgtctccactatcactgttt
gccgagaggaacgattcattcttcaagacattttgtgggaactgcacttctggattccct
ggagcccaggcattcaccggaatgaaggtggagcaaatcgagcatgggactcctggggca
gcaggtgtggaccactgtgaaaagtgcaagcagcagaggcaacagcaaagccaggaagaa
cttcctagaatggaggagcagctgccaaacaatagagactgtggatatccaggattacca
gggatgcctggtcctccaggtgaaagaggggtgaaaggagaccaggggcctccaggtcag
cgagggtatgctggacccccagggcctcctggccctcctggatttcctggtggtcccgga
acctcaggtttgcctggtcttcaaggagagcgaggtgcacctgggttagctggacagaaa
ggagaacagggtcctattggccctgccggataccctggatcatcaggaatgcctggactc
tcgggccttaaaggagagcggggctattcgggtcctcctggagagaagggcgagtcgggc
cctcctggtatccctggtccccaaggcccatcgggcccagtgggccccaaaggtggcaca
ggattacctggttcacgaggagaaaagggagatcaagggccaatcggtttcccagggaag
tctgggccacctggacccccaggaccttctggtgaaaagggcaatgatgggagtgtgggt
ccagtcggaccaactggccctccaggcagaactggacctccaggacaacagggtcctcca
ggagtagaaggtctggatgggaaggaagggaagccaggcccacggggtgagactggtcca
cctggacccccagggctcaggggactacacggatttaaaggaaaatctggccttccaggt
caacctggacagagaggtgaaccaggcgtagcaggaccacctggaaatacaggccggcca
ggctttgagggagagcctggtccaccaggacctgttggacctccagggcttcctgggcat
gtgggtgcagctggtgttccaggatctccgggccctgcaggacccccaggagtgggaaca
aagggtgatcgtggaacgtctggagaaagaggtctccctggattggtgggcccccctggc
ccgcctggagctcctgggttgatgggagagccaggtcaggatggttctgtaggaaaagag
ggctcgcctggtgcaccgggactcgcaggccaacctggaccaaagggtgagccaggaaaa
cctggtgaaaagggcgcccagggagatagaggtcctcctgggatatacggagggtattcg
ggcaagagcagcagtgtggcaatgccgggccctccagggtctcccggagaaagaggatca
cctggacccccagggcctgcaggtctacctggaatgccaggaacaccaggaacaccagga
acagcggctgatgctgttaactttgatgagatcaagagattaataagacaggaagtcaca
aaaatctttgatgaaagaatggcatactacctagccagaatacggactccagattcaacc
agccaaggaaggcccggaccccctggtaaaattggaccgcctggtcacccagggcaacca
ggtcaatctggattgcctggacaacctggaagagatggacggtctgggttacctgggcca
aaaggtcccagtggccagaagggagaccgaggtgaaaacggaattggtcgtgtgggtgag
ccaggcccacctggccctgcaggtccaccaggacgcccaggatatggtaaaattggccca
ccaggtccagttggccagcagggggtgccaggtgtgccaggcccaccaggacttcaagga
acatcggggaaaaatgggcgctgcacaccctctgactgtatcatgagggtacctgagcct
tacaatgccaagaattcaaaaggaccatctcattggatgaattaa
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