Chiloscyllium plagiosum (whitespotted bambooshark): 122563894
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Entry
122563894 CDS
T08871
Symbol
med13a
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13a isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122563894 (med13a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
122563894 (med13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
SMN_YG-box
Motif
Other DBs
NCBI-GeneID:
122563894
NCBI-ProteinID:
XP_043574038
LinkDB
All DBs
Position
28:complement(5112654..5330321)
Genome browser
AA seq
2159 aa
AA seq
DB search
MMSSSGCWVANGASLEDCYSNLFSLADLPGIKWRRYSWKGPVGTPLVIPVAEDDAVLCSF
SRCLKANVLCVWRRDVIPGHRELWIFWWGEVPNFADLIHHELKVEEEGLWEQGLSYECRT
LLFKAIHNLLERCLLNRNFVRIGKWFVKPYEKDEKPVNKSEHLSCSFTFFLHGDSKVCTS
VEINQHQPVYHLSEQHVTVAQGSSNPFQVILSPFGLSGTLTGQSFKLSDPPTLKLIEEWK
QFYPIQTSSKETTDDKQEEVDWDDDSIAAVEVIVAGVRMVYPACFVLVPQPDVATGILSS
STGTTHCTTAYASVHQVPPPIRDPAISSVTLTPPTSPEEAETAEIQATQKWAKLPSMCEV
LNMENSGHGGKIPRKLANQVVEKVWQECNLNKTQKKRKYSSVNGCEDDSSGKEASWDFIE
ATHRVNCNCSRHKNKRGTGVQGLSQTPGPQQPTALKHKMNDKQEKGEKQQKRPLTPFHHR
NSVCDDVAMEPDSSNHRLGIRQQDNRRRYSNTRPNDLVSSTKSSQLHIPELPNSPPPPPL
SPHPCERDEDVGDAFKNALTPQSQPFCQMPAPDPLLPGKTVEDRMETLPTQAFTLGFSEV
MEPTSYSSSVLQFEDDGPDVTWKCYRLPTCMESDFVPPQLPLDKYREEYVAVSNQEHALS
SVSDLVVHSNKPLKISEERVQGYILSRNQYYKSIRTEADSKSEIDPYAFDDGDEEFSLPD
KKDKQGNERDPGKKHSQKGDNDSIGVSHSMLPAEGEDAMSIFNSGTKLDGQRSPTHSRTA
STSLMNEVDLVVSYKDLDNLFDDDDELGQPGSRSALVGSDEKIGNRDSKAGPFDTFPCIS
SADLQQMFPTPPSLEQHGPGYSPMNINCKEFGSLDNTPGMTLDGHHFTATSLNHFKIEVE
EGMGSPKPSEIKDFSYVYNPEKCQGYVGCTMFAPLKILPSQCQPPVKLPEEYRPSWTVGK
LDLLPPVPPMPYIRDINIPSVGSGMDQDYIQTCTPQTHTPFGVTNSAPPSNGAGVLPSPA
TPRISAPTPRTPRTPRTPRGCGGPASVQGSVKYENSDLYSPASTPSTCRPLNSVEPATVQ
SIPEAHSLYVNLILSDSIMNLFKDCNFDSCCVCVCNMNIKGADVGLYIPDPTKESQNPCT
CGFSAVMNRRFGNNSGLFLEDELDIIGRNTDCSSEAEKRLEDLRNISVEQGEGGTKEPEK
VPDELILLLQDQCTNPFSSLRSVDPSVVAKLQTVGPPVRVEDRDYYRECYTALEQGYQFM
DNMSGGKLDETLVKNSCLHLWSRRNAVDVSMLCSQDLLRLLLSLQPVLQDAIQKKRAVRS
WESIQHVQGPLTWQQFHKLAGRGSYGTDESPEPLPIPTFMLGYECDFVVLSPFALPYWEK
LLLEPYGSQRDIGYVVVCPENEALLNGARSFFRDLSAVYESCRLGQHRPISKLLPDGIMK
VGTKAALNIAEQPVNDWFSQHCVNASNEAFSKLKLYAQVCRHDLGPYLAGQTLDSSLFSQ
PNPISSCNRSSTLQTPVQVPAGGSSASSTSAPVPSGTLANTAITGTVASSTTSNVASIPV
NLTSVSAAVKPSSSFPPFAHLNNSSSAVTAQSSASQQSNGISGDSTVGGMGQQHQEPPES
TMDRDKIGVPTEGESHAIIYPPSIVVYIVDPFTYNAEDERSSSSNVWTLGLLRCYLEMIH
FLPKHIKNAISVQIVPCQYLLQPVKNDDRHLYSQHLKSLAFSVFTQCRRSLPSSTYVKAL
TGFGPGLALDSTLKSPDRPEHLRIYSPPFILAPVKDKQTELGETFGEASQKYNVLFVGYC
LSHDQRWLLGTCTDLYGELLETCVINIDVPNRARRRKGSPRRMGLQKLWDWCLGIMQMTS
LPWRVVIGRLGRIGHGELKDWSCLLGRRTLQSLSRHLKDTCRMCGISAADSPSILSACLV
AMEPQGSFVIMPDSVSVGSVFGRGTSLNMQTSQLSTPQDTSCTHILVFPTSAMVQVPTGS
YEINVEEMGIFELLDPDDDLIINLPASPSTSPVHSPGSHYPHGGDTGKGQCTDRQESHDE
VTILQQPLALGYFVSTAKAGPLPDWFWSACPQAQNQCPLFLKASLHLHVPSVHSDELLHS
KHSHPLDSNQTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPVHFVVLTQLYNFITSML
NT seq
6480 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttcgtccggctgctgggtggcgaacggggcgagtttggaggattgttattcc
aatctcttctctctggctgacctgcctggaattaaatggcgacgttattcatggaagggt
ccagtggggacaccgctcgtcatcccggtggctgaagatgatgccgttctgtgcagcttc
agccgctgcttgaaagctaatgtactttgtgtgtggcgcagggatgtgataccaggccac
cgggagctttggattttctggtggggtgaagtgccaaattttgctgatcttatccaccat
gagctcaaagtggaagaagagggattatgggagcaaggactgtcctatgagtgccgtaca
ctgctttttaaggctattcacaacttattggaaaggtgcttgttgaacaggaactttgtg
cgaattggaaagtggtttgtgaaaccatatgaaaaagacgagaaaccggtgaacaaaagt
gagcacttgtcctgttcctttacttttttcttgcatggggatagtaaagtctgtaccagt
gttgagataaaccagcatcaaccagtataccatctcagtgaacaacatgtcactgtggcc
cagggatcctccaaccccttccaagtgatcctcagcccctttggattaagtggtaccctg
acaggtcagtctttcaagctatctgatcctcccacccttaaactgatagaagaatggaag
caattttatccaatacagaccagctcaaaggaaactacagacgacaaacaggaagaggta
gactgggatgatgactcaatagcagctgtagaagtcattgttgctggtgtgcgaatggtg
tacccagcatgctttgttctggtgcctcagcctgatgttgccactggcatcttgagcagc
tccactgggacgacacattgtacaactgcatacgcaagtgtccaccaagtgcctccccca
ataagggatccagccatttcctctgtgaccttgactccacccacatcaccagaagaagct
gaaacagctgaaatacaggccacccagaagtgggcgaagcttccttcaatgtgtgaggta
cttaatatggaaaattcagggcatggtggaaagattccaagaaagttagccaatcaagtg
gtagaaaaggtgtggcaggagtgcaatctcaacaaaacccagaaaaaacgaaagtactct
agtgtgaatggctgtgaagatgattcatctggcaaagaggcatcttgggattttattgaa
gctacgcatagggtgaattgcaactgttcaaggcataagaataaaagaggcactggtgtc
caaggactgtctcagactcctggtccacagcagccaacagcactcaagcacaaaatgaat
gacaagcaagaaaaaggggaaaagcaacagaagcgaccactaactccttttcatcaccgt
aattcagtatgtgatgatgttgcaatggaaccagattcaagtaatcacagacttggaatt
aggcaacaggacaacagaagacggtattcaaatacaaggcctaatgacctggtaagctcc
acaaagtcctcacagttacacatcccagagctaccaaactcgccgccaccaccacccctc
agccctcatccttgtgagagagatgaggatgtgggcgatgcatttaaaaatgcattgaca
cctcaaagtcagccattctgccagatgcctgcaccagatccactacttccaggcaaaact
gttgaggacaggatggagacacttcctacccaggctttcaccttgggtttttcagaagtg
atggagcctacaagctacagtagcagtgtgttgcaatttgaggatgatgggcctgatgtt
acatggaaatgttatcgactacccacttgcatggaatctgattttgtgccaccacagctg
ccgttggataaatacagagaagagtatgttgcagtgagcaaccaagaacatgcactttct
tctgtctcagatttggtggtacactcaaataagccattgaagatctctgaagagcgggta
cagggatacatcctgagtcgaaaccagtactacaagagcattcgtacagaggcagactcc
aagtcagaaattgatccatatgcatttgatgatggcgatgaagaattcagcctgcctgat
aagaaggacaagcaaggcaacgagagagatcctggaaagaaacattcacaaaagggggac
aatgacagtattggtgtatcccattcaatgttgccagcggaaggagaggatgccatgtcg
atatttaattctggaacaaaactagatggacaaagatcgcccacacacagtcggactgca
tccacaagcctcatgaatgaggttgatctggttgtctcgtataaagatcttgacaatctg
tttgatgatgatgatgaacttgggcagcctggttctcgaagtgcactcgttggatcagat
gagaaaatcggcaacagggattcgaaggctggaccttttgacacattcccttgtataagt
tctgcagacctgcagcagatgtttcccacgcctccatccttggaacaacatggcccaggc
tactctccaatgaatattaattgcaaagagtttggaagcttggataacaccccaggaatg
actctggatggccaccattttactgcaacaagcctgaatcatttcaagattgaagtggaa
gagggaatgggtagtcctaaaccttcagagattaaggacttttcttatgtttataatcct
gagaagtgccaaggttatgtggggtgtactatgtttgcaccattgaaaatcttaccaagc
cagtgtcagccccctgtaaaactcccagaggaatatcgcccttcgtggactgtgggcaag
ttggacctgcttcctcctgtacctcccatgccatatatccgtgacataaatattccaagt
gttggaagtggtatggatcaggattacatacagacctgcacaccacaaacgcatacccca
tttggagtgacgaacagtgctcctccaagtaatggtgctggtgttcttccatcacctgcc
actccacgcatctctgcaccaactccaaggacaccaaggaccccacgcacccctcgtgga
tgtgggggtccagcaagtgttcagggctctgtgaagtatgagaactctgatttatattca
cctgcttctacaccttcaacttgtcgtccattgaattcagtagaacctgcaacggtacaa
tccattcctgaagcgcacagtctttatgtgaacctaatcctatctgattccatcatgaat
ctctttaaagattgcaattttgacagctgctgcgtctgtgtctgtaacatgaacatcaaa
ggagctgatgttggattgtacatcccagatcctaccaaagagtcacaaaacccatgcaca
tgtggattcagtgctgtcatgaaccgaaggtttggaaacaactctgggctctttttggaa
gatgagttagatattattgggcgaaacacagactgtagcagtgaggctgaaaagcgacta
gaggatctccggaatatttctgttgaacagggggaaggaggcaccaaggagcccgaaaaa
gtgcctgacgagttaatattgctacttcaggaccagtgcactaaccccttctcctcattg
agatcagtggatccttcagtagtggcaaaattacaaacagtgggaccaccagtgcgtgtg
gaggatagagactattacagggaatgttacactgctttggagcagggatatcagtttatg
gacaatatgtcaggtgggaagcttgatgaaacacttgtgaagaactcttgtttacatctc
tggtcaagaagaaatgctgtggatgtcagcatgctatgttcgcaagatcttctacgcctt
cttctctcccttcagcctgttttgcaagatgccatccagaaaaaacgagctgttaggtca
tgggagagtatccagcacgtgcaggggcctctcacttggcaacagttccacaaattggct
ggtcggggatcttatggtacagatgagtctccagagccactaccgatcccaacatttatg
ttgggttatgaatgtgattttgtggtgttatctccatttgcattgccatactgggagaag
cttcttctggagccatatggatcgcagagagatatcggctatgttgtggtgtgtccagaa
aatgaagcacttttaaatggagcaagaagtttctttcgtgatctcagtgcggtctatgag
tcctgcagacttgggcagcacaggcccatctcaaaattgcttcctgatggaatcatgaaa
gttgggaccaaagcagccttgaatattgcagagcagcctgtaaatgactggttctctcag
cactgtgtgaatgctagcaatgaagcattttccaaactgaaactttatgctcaagtgtgc
agacacgatctgggtccatatcttgctggtcaaacattggacagttcgttattctcgcaa
cctaaccccatttcctcttgcaatcgatccagtacattacaaactcctgtacaagttcct
gctggaggttcatctgcatcttccaccagtgctcctgtaccatctggtactttagcaaac
actgccataactggcacagtagctagtagtactacttcgaatgtggcttcaatacctgtg
aacctgaccagcgtatctgctgcagtaaaaccgtcttcctcttttcctccatttgcacat
ttgaataattcctccagtgctgtgactgcacaaagctcagcctcccagcagagtaatggt
atctctggtgattcaacagttggtggaatgggacaacaacaccaggaacctccagagagc
accatggacagggataaaattggggtcccaacagagggggagtctcatgccatcatttat
ccaccatccatcgttgtgtacattgtggatccttttacttacaatgcagaggacgaaaga
tcgtcatcttcaaatgtttggacacttgggctattacgctgctacctagagatgattcat
ttcttaccaaaacacatcaagaatgcaatatctgtgcaaattgtcccatgtcagtatctg
ttacagcctgtgaaaaatgatgatcggcacctgtactcccagcaccttaaatctttggcg
ttttctgtgttcactcaatgccggagatcattaccatcctccacctatgtcaaagcactg
actggctttggcccaggcttggccttagacagcaccttaaagagtccagatagaccagag
catttgcggatttatagcccgccgtttattttggctccagtgaaggataagcaaactgag
ctaggagaaacatttggcgaggcgagccagaaatataatgttctttttgttggctattgc
ttgtcacatgatcagaggtggttgcttggaacatgtacggatctctatggagagttgctg
gagacctgtgtcattaatatagatgtaccaaacagggctcgcagacggaaaggttcaccc
cggagaatgggattgcaaaaactctgggattggtgtttgggcatcatgcagatgacatca
ctaccctggagggttgtcattgggcggcttgggaggataggacatggagaattaaaagac
tggagttgtttgcttggtcgtcgcactttgcagtccctcagccggcacctgaaggatact
tgcagaatgtgtggtatttctgcagctgattctccaagcatccttagtgcttgtttggtt
gctatggaaccacagggatcgtttgtgataatgcctgattctgtgtctgttgggtcagtg
tttggtcgtggcacatcactcaacatgcagacgtcgcaactgagcacgccacaggataca
tcatgcactcacatcctagtgtttcctacctccgcaatggtgcaagtgccaactgggagc
tatgaaataaacgttgaggaaatgggaatctttgaattactggacccagatgatgatctc
ataattaacttgccagcatctccatccacatccccggtacattcaccagggtcccattat
ccacacggtggtgacacgggcaagggtcagtgcacagaccgacaggaatctcatgatgaa
gtcaccattttgcagcagcccctggcactgggatactttgtctcgacagctaaggctggg
ccacttcctgattggttttggtcagcctgccctcaagcacagaaccaatgtccacttttt
ctcaaggcctcgttgcacctccacgtgccttcagtgcattcggatgagttgcttcatagt
aagcactcccacccacttgattcaaaccaaacctctgatgtgctcaggtttgttctagaa
caatacaatgctctttcttggctgacctgtgaccctgccacccaggaccgccgctcctgc
ctccctgttcattttgtggtgctgacgcaactgtacaacttcatcacaagcatgttgtaa
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