Chiloscyllium plagiosum (whitespotted bambooshark): 122563922
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Entry
122563922 CDS
T08871
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030
DNA replication
cpla03420
Nucleotide excision repair
cpla03430
Mismatch repair
cpla03440
Homologous recombination
cpla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122563922 (rpa1)
03420 Nucleotide excision repair
122563922 (rpa1)
03430 Mismatch repair
122563922 (rpa1)
03440 Homologous recombination
122563922 (rpa1)
03460 Fanconi anemia pathway
122563922 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122563922 (rpa1)
03032 DNA replication proteins [BR:
cpla03032
]
122563922 (rpa1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122563922 (rpa1)
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122563922 (rpa1)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122563922 (rpa1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122563922 (rpa1)
MMR (mismatch excision repair)
122563922 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122563922 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
122563922
NCBI-ProteinID:
XP_043574106
LinkDB
All DBs
Position
28:complement(7632466..7731487)
Genome browser
AA seq
613 aa
AA seq
DB search
MAIRLSEGAISSIVQGGTPSQPLLQVISIRRITNGPPRYRVLMSDGIHTLSSFLLATQLN
YMGDEGLIAVNCVCQINRFICNTMKDGRRAVVIVDLKVVKPADQVNGRIGNPVPINEGQA
QQSAALANQSATKPMQNGYASDTASVHSTLAKSESMISSKPSGIRGPPSSSAGSQTKVVP
IACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLDESGEIRATAFTEQVDKYF
PLIEVNKVYYVSKGTLKTANKQYTSVKNDYEMTFTNETTVIPCDDSDDLPTVQFEFVPID
QLENKNKDTMLDVIGVCKSFEDVTKITVKSNNREVSKRNVYLLDMSGKIVSTTLWGEDAE
KFDGSQQPVVAIKGARLSDFGGRSLSVLSSSMVLINPDIPEAFKLRAWFDTDGQIMEGTS
ISDVKGSSFGGGNTNWKMLLEVKNENLGHGDKADYYTTVGTIVYLKKENCMYQACPTPEC
NKKVVDQQNGLYRCEKCDREFPNFKYRMILSINLADFGENQWVTCFQETAEAILGQNATY
LGELKESNEQAFEEIFQNANFRSYTCRIRVKLETYNDESRIKATMMDVKPVDHKEYSKRL
IMNIRKHAATQAY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcgattgtcggagggggctatttcgtcaatagttcaaggaggaacaccttca
cagccacttttacaagttattagtatccgacgcattacaaatggccccccaaggtatcgc
gtgctgatgagtgatggaatccatacactgtcctctttcctgcttgcaactcagctgaat
tacatgggagatgagggtcttattgcagtaaactgtgtctgccagatcaaccggttcatc
tgtaatacaatgaaggatggaaggcgtgctgtcgtgattgttgacttaaaagttgtcaaa
ccagccgatcaggtgaatgggagaattggtaatccagtgccaatcaatgaaggtcaggca
cagcaatcagctgctcttgccaatcagtcagcaaccaaaccaatgcaaaatggctatgca
tctgatactgcttcagtacacagcaccctagcaaaatctgaaagcatgatatcaagcaag
ccgagtggtatcaggggaccacccagcagctctgcaggatcgcagaccaaagtggtgccc
attgcttgccttaacccctaccagtcaaagtggacaattcgggctcgtgttaccaataag
agtcaaattagaacgtggagcaactcccgtggagagggaaagctattttccattgagctg
ctggatgaaagtggtgaaattagagccacagctttcactgagcaggtggataagtacttc
ccacttattgaagtgaataaggtatattatgtgtcaaaaggaacattgaagacagccaat
aaacagtatacatctgtgaagaatgattatgaaatgacttttactaatgagaccactgtg
atcccttgtgatgactcagatgatttgccaacagtccaatttgagtttgtaccaatagat
cagctggaaaataaaaacaaggatacaatgcttgatgtaattggagtctgcaagtcattt
gaagatgtcactaagataacagtgaagtcaaacaatcgagaagtatccaagaggaatgtt
tatttgttggatatgagtggaaaaattgtctctactacgctgtggggtgaggatgctgag
aagtttgatggatcacagcagccggtggtggctataaaaggagcccgactttcagatttt
ggtggccgatccctatctgttttgtcatccagcatggtcttgattaaccctgatattcca
gaggcttttaagctgagggcatggtttgatacagatggccaaataatggaagggacatcc
atttcagatgtaaagggtagttcgtttggtggaggcaataccaactggaagatgttgctt
gaagtaaaaaatgagaacttgggtcatggagataaggctgattattataccactgtaggt
acaattgtgtatttgaagaaggaaaactgtatgtaccaggcatgtcccactccagagtgt
aacaagaaggttgtggatcaacagaatggtctttataggtgtgagaaatgtgatcgtgaa
tttcccaacttcaaatatcgtatgattttgtcaataaatctggcagattttggagaaaac
caatgggtcacatgtttccaggagacagcagaggcaattcttggtcagaatgctacttat
cttggagaactaaaggaatcaaatgaacaagcctttgaagaaatattccagaatgcaaat
tttcggtcatacacctgcaggatccgtgtcaaacttgaaacttacaatgatgaatctcgc
atcaaagcgacaatgatggatgtgaaaccagtggaccataaggagtacagcaagagactg
ataatgaatattaggaaacatgcagctacacaagcttactga
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integrated database retrieval system
