Chiloscyllium plagiosum (whitespotted bambooshark): 122564005
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Entry
122564005 CDS
T08871
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122564005 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122564005 (smarca2)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122564005 (smarca2)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122564005 (smarca2)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122564005 (smarca2)
Chromatin remodeling factors
BAF complex
122564005 (smarca2)
PBAF complex
122564005 (smarca2)
GBAF(ncBAF) complex
122564005 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122564005
NCBI-ProteinID:
XP_043574365
LinkDB
All DBs
Position
2:131910179..132044474
Genome browser
AA seq
1579 aa
AA seq
DB search
MSTPTDPSGGMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPSNVTHSIPP
QGPSEYQQDSMHQMHKPIDAMHDKGMADEMHYGQMKGMGMRAAHAGMGPPQSPMDQHSQG
YLSPHPSPMSVPEHVPSPMSAGGPTPPQIPPTQVAPMLQGDPQVMSQQNRGPSPFNPVQL
HQLRAQILAYKMLARGQPLPDNLQLAVQGKRSLPSMQQQVAPIAYNRPPNMGMHSMAGQA
VGPSQIMQGHVTNVPKPWTEGQVNEMGIPNTPQKMPAQATCGRPSPAPAVQATPSGPGAS
LSQQPVVQPSPTIQLHQKQNRITPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPG
SLPPDLRNKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNVKAYKRSKRQSLREA
RITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLSRAIGTWHAN
TEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVASLTKLVYE
HKAAQAAKEKKKKKKKKKKTEEAAEGASTTLAPDGELLDESSQMSDLPVKVIHVETGKVL
QGADAPKAVQLDTWLEMNPGYEVAPRSDSEESGSEYEEEEEDEEAPVAPDSEEKKIIVPN
IEDVSDFFAKQIIECAKQDVDDEYSMRAGMKGSQSYYAVAHAVTERVEKQSALLINGSLK
QYQLQGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTL
SNWVYEFDKWAPSVVKISYKGTPALRRSFIPQLRSGKFNVLLTTYEYIIKDKHVLAKLRW
KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKS
CSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYV
IKCDMSSLQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPFMFQHI
EESFAEHLGYNGGLITGPDLYRASGKFELLDRILPKLRVSNHRVLLFCQMTSLMTIMEDY
FALRSFPYLRLDGTTKAEDRGALLKMFNEENSKYFIFLLSTRAGGLGLNLQAADTVIIFD
SDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFD
QKSSSHERRAFLQALLEHEEQNEGDTNASPSCSTTWEEDEVPDDETLNQMIARHEEEFEL
FMRMDLERRREDARNPKRKPRLMEEDDLPSWIVKDDAEVERLTCEEEEEKMFGRGSRMRR
DVDYSDALTEKQWLRAIEDGNLEEMEEEIRQKKARKRRRNVDKDPSKEDGKKKKKRGRPP
AEKLSPNPPRITKQMNAIIDTVINYRDSLSRQLSEVFIQLPSRKELPEYYELIRKPVDFK
KIKDRIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEE
ESEEESNDDDEEEEESGSETKSVKVKIKLGRKDSDKSREKGKSKKRLGRTKIKPVISDDD
SDDDQDDNDQSDISGSEDE
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactcctacagatccctctggtgggatgccccaccctggaccttcaccaggccca
ggtccatctcctgggcctattcttggcccaagcccaggaccaggaccctcgccaggttca
gtacatagtatgatgggcccgagtccaggaccgtcaaacgtgacccattcaataccaccc
cagggtccgagtgagtaccagcaggacagcatgcatcagatgcacaagcctattgatgca
atgcatgacaaggggatggctgacgaaatgcactatggtcagatgaaaggcatgggaatg
agggctgctcatgctggaatgggaccacctcagagtccaatggatcagcattctcaaggt
tatctgtctcctcatccatcgcctatgagtgtaccagagcacgttcctagtccaatgtca
gcaggtggtcctactcctcctcagattccaccaacccaggttgcaccaatgttgcaagga
gatcctcaggtcatgagccagcagaacagaggtccttcaccattcaatccagttcaactt
catcaattgagggctcagattctggcctacaaaatgcttgctagaggacaaccattacca
gataatctgcaactagctgttcaggggaagcgatcactacccagtatgcaacagcaagta
gctcccattgcttacaacagaccacctaacatgggcatgcattcaatggctggtcaggct
gtagggccctcacaaataatgcaagggcatgttactaatgttccgaaaccctggacagag
ggtcaagttaatgagatgggtattcccaatacacctcaaaaaatgcctgctcaggctaca
tgtggaagaccttcacctgcaccggctgtacaagcaactccatctggtcctggggcctca
ctgtctcaacagcctgttgtccagccttcacctactatccaacttcatcagaagcaaaac
cgtataacacccatccagaaaccgcagggattagatcctgttgaaattcttcaagaacgt
gagtacaggcttcaagctcggattgctcatcgtattcaagagcttgaaaacttacctggt
tccttacctccggatttacgcaataaagctactgttgagttaaaagcccttcgactactg
aacttccaacggcagctgaggcaagaagtggttgcctgtatgcgacgtgacaccactctg
gagacagcactcaatgtgaaggcctacaaacgtagtaaacggcaatcattaagggaggct
cgaatcaccgagaagctggagaagcagcagaagattgagcaagagcgcaagcgcaggcag
aaacaccaggagtatctcaatagtatactgcagcatgctaaggacttcaaggaatatcat
cgttcagttactggaaaaattcagaaactttccagagcaattggtacttggcatgccaac
actgaacgtgagcagaagaaagaaacagaaaggattgagaaagaaagaatgaggcggctg
atggcagaagatgaagaagggtatcgtaaactaattgaccagaaaaaagataaacgtcta
gcatacttgcttcagcaaacagatgagtatgttgcgagccttactaaactggtttatgaa
cataaggctgcccaggctgcgaaagagaagaagaaaaagaagaagaaaaagaagaaaact
gaagaagctgcagaaggagcaagtactacgcttgctcctgatggagagcttttggatgaa
agcagccagatgagtgatttgccagtcaaagttattcatgttgaaactggaaaagttctt
cagggagctgatgctccaaaagcagtccaactagatacatggttggaaatgaaccctggg
tatgaagtagctccaagatcagacagtgaggagagtggatcagagtatgaagaggaggag
gaagatgaagaagccccagttgcacctgatagtgaagaaaagaagattatcgttcctaat
attgaagatgtatctgacttctttgcgaagcaaataattgaatgtgctaaacaagatgtt
gatgatgagtacagcatgcgagctggaatgaaaggttcacagtcatattatgcagtggca
catgctgtcacggaaagggtagagaagcaatcagctttgttgatcaatggatcacttaaa
cagtaccagcttcaagggcttgagtggctggtttctctttacaataacaatctgaatgga
attctggctgatgagatgggacttggaaagacaatccagactattgcactcatcacctat
ctgatggaacacaagagactaaatggaccttatctcattattgtacccctctcaacttta
tctaactgggtgtatgagtttgataaatgggccccatctgttgtgaagatttcctacaag
ggtacaccagctctccgccggtcatttattccacaactgcgcagtggaaaattcaacgtt
cttttaaccacttatgaatatattatcaaggacaaacatgtgcttgctaagcttcgatgg
aaatacatgattgtagatgagggtcatcgtatgaagaatcatcattgtaaactgacgcag
gtgttgaacactcactatgtcgcacctcgccgtgtccttttaacaggaactccattgcag
aacaaactccctgaattgtgggcccttctgaacttccttttgccgactatcttcaaaagc
tgcagcacctttgaacagtggtttaatgctccatttgcaatgactggagaaagggttgat
ttgaatgaagaggaaacaatattgataattcgtcgtcttcataaagtgctgcgacctttc
cttctgagaaggctgaaaaaagaagtggaatcccagttaccagaaaaggttgagtacgtc
atcaaatgtgacatgtcttctctacagaagattctataccgccacatgcaagctaaggga
attcttcttacagatggttctgagaaagacaaaaagggtaaaggtggtgctaagactctc
atgaataccataatgcagctgagaaaaatatgcaatcaccccttcatgtttcagcacata
gaggaatcctttgctgaacatttgggttataatggaggactcattactggtccagaccta
tatagagcttcaggaaaatttgaattattggaccgtattttgccaaaactgcgagtttct
aatcacagagtgctactgttctgccagatgacatcactgatgaccattatggaagactat
tttgcactccgaagttttccgtatttgcgacttgatggaacaactaaggcagaggatcgt
ggtgctttgttgaaaatgtttaatgaagaaaactctaagtacttcatatttttgctcagc
acccgagccggtggcctgggcttgaatcttcaagctgctgatactgttatcatctttgac
agtgactggaatccacatcaggatttgcaagcccaagatagggctcaccgtattggacag
cagaatgaagtccgtgtcttgcgcctctgcacagtcaacagtgtggaggagaaaattctt
gctgctgccaaatacaagcttaatgtggaccagaaagttatccaggctggtatgtttgat
caaaaatcttcaagtcatgagcgtcgagctttcctgcaggctttgctggagcatgaggaa
cagaatgagggggacaccaatgcttctccttcctgcagtactacctgggaagaagatgaa
gttccagatgatgagaccctgaatcaaatgattgctcgtcatgaagaggagtttgaactg
tttatgcgcatggacctggagcggcgaagagaagatgcacggaatccaaaacgtaaacca
cgactgatggaggaagatgacctcccatcatggattgtgaaagatgatgcagaggttgag
cgtttgacttgtgaagaggaggaagagaagatgtttggccgtggttcacgcatgcgcagg
gatgtggactacagtgatgctcttacagaaaagcagtggctaagagcaattgaagatggt
aatttagaagaaatggaagaggaaatacgtcaaaagaaagctagaaagcgcagaagaaat
gtagataaagatccatcaaaagaagatggaaagaagaagaaaaagagaggcagacctcca
gctgaaaagctgtctccaaatccaccaaggatcactaaacagatgaatgctatcattgac
acagttattaactacagagacagcttgagccgacagctaagtgaggtttttatccagtta
ccttcacggaaggagttgcctgaatactacgagctaatccgaaaacctgtagatttcaaa
aaaattaaggaccgcattcgcaaccataagtatcgaagcctgggagatctagaaaaagat
gtcatgttgttatgtcataatgctcagacgttcaacctggaaggatcacagatttatgaa
gactccattgtccttcaatctgtattcaaaagtgcaaggcagaagattgctaaagaagaa
gaaagtgaggaggaaagtaatgatgatgatgaagaggaggaggagtcaggatctgagaca
aaatcggtcaaagttaaaataaagcttggtcgaaaggacagcgacaaaagtcgcgagaaa
ggaaaaagcaagaaacggctaggtcgtactaaaatcaagcctgtcattagtgatgatgac
agtgatgatgaccaagatgacaatgaccaatctgacatcagtggaagcgaagatgaatga
DBGET
integrated database retrieval system
