Chiloscyllium plagiosum (whitespotted bambooshark): 122564032
Help
Entry
122564032 CDS
T08871
Name
(RefSeq) LOW QUALITY PROTEIN: very low-density lipoprotein receptor-like
KO
K20053
very low-density lipoprotein receptor
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122564032
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
122564032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
Vgb_lyase
EGF
EGF_3
hEGF
Motif
Other DBs
NCBI-GeneID:
122564032
NCBI-ProteinID:
XP_043574426
LinkDB
All DBs
Position
2:132196851..132229141
Genome browser
AA seq
1577 aa
AA seq
DB search
MLLAVLVRDCENELSLLEESKLWIIAVPLRIDMIPFHVALLLLSVVCSNPTRLVNGSRAP
CDASWFRCRNGRCVPLMWKCDGDDDCTDGSDESDCGKITCGPSDFTCLNGHCLPSKWQCD
GSADCEDGSDESPEICHTQTCHLHEMSCGPKSLQCIPVSWKCDGEKDCDNGSDEENCDTL
ICSILEFTCSSGRCISKTFICNGEDDCGDGSDEQGCAPFVCHIHEFQCNSSECIPLNWVC
DNNADCADQSDEAPERCGYTLAPVTCSSSEFLCESGECINHRWYCDGDTDCKDGSDEVNC
PPQTCRPDYFQCSDGVCIPENKICNNFADCTDASDEANCKNGKCSHSNNLNXCEIPHLCP
IYSFFKCTGPSDFKCQSGECIAITKVCDHKWDCRDHSDEPFQCGLNECLANNGDCSHICR
DLLIGYECDCPAGFKLVDERICDDADECQNPGVCSQICINLKGSYKCECYEGYHMDPATG
VCKAIGQEPYLIFTNHHDIRKLGLHHREYSQALVQLKNAVALDVDVAEQRIYWADLGQRA
IFSMSMNRYKSKADQSVLTKDLGIPVGIAVDWIYKHIYWTDRGTKTISVATLDGSRKSVL
FDTNLTEPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGNDRGLLVTKDIQWPHGIALDLV
KSRLYWVDLKQHSLSSIDLNGQDRRTILQSREFLPRPLGIAIFEDNVFWVDGEQKALYGT
NKFTGSDIRLLAANLTEPSDVIVYHRLTQPAGKNWCENLKTRSCEYMCLPAPQVNSYSPR
YTCVCPTGTKVQKDGWHCGMVATCGTSDFMCNNRQCIPSRWLCDGKADCEDGSDELTEVC
HEVTCLGHEISCGLGSFQCVPVAWRCDGEKDCSNGGDEVGCGIITCNPEEFTCLSGNCIS
RTFVCNGVADCADGSDEKKCTSHTCGIHEFHCNSSECIPSNWVCDGSLDCSDKSDESPEH
CGHTVSHLPVACAPYELPCDSGECIQRHWFCDGDADCRDGSDEANCPPKTCRPDQFRCDG
NCIPRQKKCNFFRDCHDGSDEVNCKKISECSGPTDFRCQSGECINITLVCNHQQDCKDWS
DELNGCNQNECLKKNGGCSHFCHDLVIGYECECPAGFELIDQKTCADVNECLNPGSCSQI
CINTEGSYSCECNAGYTTDPVSGACKAVGGEEPYLIFTNRHDIRKLGLHRQEYTEVVKEL
RKAVALDADFAGQRIFWADVSQQAIFSMLMNETAEARIFKINVSLQIPVGIAVDWIYKHV
YWTDRGTNTISVATFDGKKNIILFNTDLREPASIAVDPHSGFIYWSDWGTPKIEKAGMNG
VNRQTLVATKIEWPKGISLDLVKSRLYWVDAKLHVLASVDLNGQNRRTVLQSEKFLAHPC
AVALFEDHVFWVDAENQAVYGANKYTGNNIKALASNVDAQDVIIYHELLQAPGKNWCENG
ACEHMCLPAPQINSQSAKYTCVCPTGMELTNDEQQCQPVSTLTTANMSTMASSVTPEELS
FSLSTMSPTILATSKGVKSHSLPEQKSRGSTAVWVVIILALLIITGLVGYFGWQSWQKKN
VQYTSFENPVFQHKSTE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgcttttggccgttttggttcgggattgtgaaaacgaattatcattactggaggaaagc
aaactttggattattgctgttcctttaagaattgacatgattccttttcacgtagccttg
ttgctactgtcggtagtatgttcaaacccgaccagactcgtaaatggttcaagagcaccc
tgtgatgcatcatggtttcggtgcagaaatggacggtgtgtgccattaatgtggaaatgt
gatggtgatgatgactgtactgatggtagtgacgagagtgattgtggtaaaatcacctgt
ggaccatcagactttacttgtcttaatggacattgtttgccaagtaaatggcagtgtgat
ggctctgctgactgtgaggatggatcagatgaaagtcctgagatctgtcacacacagaca
tgccatttacatgaaatgagctgtggccctaaatctcttcagtgtattcctgtttcctgg
aaatgtgatggagaaaaggactgtgacaatggcagtgatgaagagaactgtgacactttg
atttgcagtatacttgaattcacatgctccagtggtagatgcatttctaaaacatttatc
tgcaatggtgaagatgactgtggtgatgggagtgatgaacaaggttgtgccccatttgtt
tgtcacatccacgaatttcagtgcaatagctcagaatgtatccccctgaattgggtatgt
gacaacaatgctgattgtgctgaccaatctgacgaggctccagagcgctgtgggtacaca
cttgcccctgtgacctgctcgtccagtgagttcctgtgcgagtctggtgaatgcatcaat
catcgttggtattgtgatggtgatactgactgcaaagatggaagtgatgaagtgaattgt
cctcctcaaacatgtagaccagattacttccaatgtagtgatggtgtttgcatccctgag
aacaagatctgcaataattttgcagactgcactgatgccagtgatgaagccaactgcaag
aatggtaagtgtagtcatagtaacaatttaaactagtgtgaaattccacacttatgccct
atttactctttttttaagtgcactggtccctctgatttcaaatgccaaagtggagaatgc
atagctataaccaaggtgtgtgatcacaaatgggactgcagagatcacagtgatgaaccc
ttccaatgtgggctgaatgaatgtttggcaaacaatggagactgctctcacatttgtagg
gaccttcttataggttatgaatgtgactgccctgctggctttaagcttgttgatgagaga
atatgtgatgatgctgatgagtgtcaaaatcctggagtctgcagccagatttgcattaac
ttgaagggaagctacaaatgtgaatgttatgaaggatatcacatggatcctgctactgga
gtttgcaaggccattggccaagagccttacttgatcttcaccaatcatcatgacattcgg
aaattgggactgcatcatcgagaatatagccaggcacttgtacagctgaaaaatgctgtg
gcattggatgttgatgttgcagagcagagaatctactgggctgatctgggccagcgggca
attttcagcatgtccatgaatagatacaaaagcaaagctgatcagtcagtccttacaaaa
gatttgggcattcctgtgggaattgctgtggactggatttacaagcatatctattggacc
gaccggggtacaaaaactatatctgtggccacgctggatggatccaggaaaagtgttctc
tttgacaccaacctaacagaaccagcttctatagcagttgatccgctatccgggtttgtt
tactggtcagactggggtgagccagccaagatagaaaaagcaggaatgaatggcaatgac
cgtggtcttctagtgaccaaagatattcaatggcctcatggcattgctcttgatcttgtg
aaaagccgtctctattgggttgacttgaaacaacatagtctatcaagcatagacttaaat
ggccaagacagaagaactatactgcagtcaagagaatttctccctcgccctcttggaatt
gctatatttgaggataatgtcttctgggttgatggagaacagaaagctctgtatggaaca
aataaatttacaggttcagatatcaggcttttagctgccaacttgacagaaccttcagat
gtcattgtttaccacaggctgactcagccagcaggcaaaaactggtgtgagaatctgaag
accagaagctgtgagtacatgtgtctgccagctcctcaggtcaacagttacagtccaaga
tacacttgcgtgtgtccaactggaacaaaagtccagaaggatggatggcattgtggaatg
gttgcaacttgtggaacatctgactttatgtgcaacaatagacaatgcatacccagtagg
tggctgtgtgatggtaaagctgactgtgaagatggatcagatgagctaacagaagtctgt
catgaagtaacctgtcttggccatgagatcagctgtggcctaggatcatttcaatgtgtt
cctgttgcttggcgatgtgatggtgaaaaggactgtagtaatggtggtgacgaagtcggc
tgtggcataatcacttgcaacccagaagagtttacttgtctcagtggcaactgcatttct
cgaacatttgtctgcaatggtgtggctgactgtgctgatgggagtgatgaaaagaaatgc
acttcacacacctgtgggattcatgagtttcactgcaatagttcagagtgtataccttct
aattgggtatgtgatggcagtttggattgcagtgacaaatctgacgagtcaccagaacac
tgtgggcacaccgtctctcatctgcctgtggcatgtgctccttatgagctcccatgtgat
tctggtgaatgtatccaacgtcactggttctgtgatggtgatgctgactgcagagatgga
agtgatgaggcaaactgccctcccaaaacatgtcgaccagatcagttcagatgtgatggt
aactgcatccccagacaaaagaaatgtaacttctttagggactgtcacgatggtagtgat
gaagtcaactgcaagaaaatttcagagtgcagtggacctactgacttcagatgtcaaagt
ggtgaatgcataaacatcaccctcgtatgcaaccaccagcaagactgcaaagattggagt
gatgaactaaatggatgcaatcaaaatgaatgtttgaagaagaatggtggttgctctcac
ttctgccatgatcttgtcattggttatgaatgtgaatgccctgctggctttgaactaatt
gaccagaaaacctgtgcagatgtaaatgagtgtctcaatcctggatcctgcagccaaatt
tgtataaatacagaaggaagttacagttgtgaatgcaatgcaggatatactactgatcca
gttagtggagcctgcaaggcagtaggaggagaggaaccatatttgatcttcacaaatcgt
catgacatcaggaagctgggactgcatcgccaagagtacactgaagtagtcaaagaacta
aggaaagctgtagcattagatgctgattttgcagggcagaggattttctgggctgatgtg
agccaacaggcaattttcagtatgctcatgaatgaaacagctgaagctcgtattttcaaa
atcaatgtcagtttgcaaatcccagttggaattgcagtggattggatctataaacatgtc
tattggactgaccgtgggaccaatactatatctgtggctacatttgatggaaagaaaaat
atcatcctcttcaacactgacttaagggaaccagcttctatagctgttgatccacactct
gggtttatctactggtcagattggggcactccaaagattgagaaagctggcatgaatggt
gtgaatcgccaaactttagttgccacaaagattgagtggccaaagggaatttctcttgat
cttgtgaaaagccgtctgtactgggttgatgcaaaactgcatgtgctagcaagtgtagac
ctgaatggtcagaacagaagaacggtgttgcagtcagaaaaattccttgcacatccctgt
gcagttgcattatttgaggatcatgtattctgggttgatgcagaaaaccaagcagtttat
ggagccaacaaatatacagggaataacatcaaagctttggcctccaatgtggatgctcag
gatgttatcatttatcatgagctcttacaggcacctgggaaaaactggtgtgagaatgga
gcctgtgagcacatgtgtcttcctgctcctcaaatcaacagtcaatcagcaaaatatact
tgtgtatgtccaactggaatggaactgaccaatgatgaacaacagtgtcagccagtatct
acacttacaacagcaaatatgtctacaatggcttccagtgtcacccctgaagaactttcc
ttcagtttatctactatgtcaccaactatcttggccacttctaaaggtgtgaagtctcat
tctcttcctgaacaaaagtcaagaggatctacagctgtttgggtcgtcattattcttgca
cttctaataatcactggcttagttggctattttggctggcaatcctggcagaagaagaat
gtacaatacaccagttttgagaatccagtgtttcagcataaatccactgaatga
DBGET
integrated database retrieval system
