Chiloscyllium plagiosum (whitespotted bambooshark): 122564493
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Entry
122564493 CDS
T08871
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122564493 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122564493 (topbp1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122564493 (topbp1)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122564493 (topbp1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122564493 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
122564493
NCBI-ProteinID:
XP_043575384
LinkDB
All DBs
Position
29:complement(32288045..32355090)
Genome browser
AA seq
1500 aa
AA seq
DB search
MPSSAKSEPFLVKFIKSKGKDSEYFTKAYKAIKEFKSEDFLQMIHEDEVFNLKVKDSSLY
ICDPFEGDAYNHLKKLGCRIVGPQVVVFCLQQQQSVPEAVHPVYSMVMADVVVSCTSLDK
QTRDDVHKQVQLMGGRILRDFNISVTHLIAGEVGSKKYLVAASLKKKILLPSWVKACWEK
AKKGIISLTDVDMEEHLCPPFLGCTVCVTGLSSQDRQEVQRLTLENGGQYSGQLKMNDCT
HLIVQEPKGQKYECAKKWNVYCVSIQWFFDSIKHGTCQDESNYKVESETKPTEVAPSTST
PTNLGDALSSRPLSDVSHISNISTSCINESAFSSAMVAKLEAPDDHLEAIDIDLSEVPED
LLDGCKIYLTGFSGKKLDKLRRMINFGGGIRFNQVCEDVTYIIMGEEDKELKHCLNKISN
RPYVVTARWLVDCFSKKCLLPVEQYFHPSYQPDIPIPQRSSNQAHLTLNGSKARRTSTVS
PDGQQEADDDLLLQYLENDKSVVESENQDKTRNNLSDTLHKTEYQNNQSANTSICETESC
AEQGIFWKKKFLIFGFANEDETYMAELIQSNGGKVLRPHSRIVADFAVVPLLGTQVDATV
AEVVTNTWLAMCIDQQRILASQSNALFTPISVVEGSTPLTNCVLSISQFTGVERDALFNI
AELLGAQVQEFFVRKANLKKGMLASTHLVLQEPQGSKYEAAKKWNLPAVTASWLFASAQS
GKKADESKFSVENAVSAVAEVNQQSKASNVDKVQQQTPEHPLSKLKSMQSSVVTPLDIKR
FQSKAFQLVLSQQNRTETTETRAEVGVPSQQREANLLLDTPSKFLCKDKLFKPSFDVQDA
LAVLETPKNPDQRNRKMSTPLSEVIGRNLKVALANSTRNTIVPTAASPQLHVSKPAQEEP
KVLADVVICVSKKLGKKQGDLNAIAASLGADYRWSFDETVTHFIYQGRQNDSNREYKSIK
EKGIHIVSEYWLFACADEQRKVPESLYPHTYNPNMSLDMSAIQETRVSTQMYLSQARCRE
EQTSDMPEAEELESENDEQLKVGRTLQDEQSEECGDLTETSEMRENFQRQLQEIMSATRV
ERSVGHRGAMSRGALEYSPTSADSAVRSGRSRALESLRRSHSAVAEINTEPSQNEQIIWD
DPTAREERAKLANNMQWPGSPSQCSEQFQKNTEQVEERNAKHKDSLTDSEIAAIEIPQCL
PVTNGDILMKDDRLTPTPQAPSIAFPLTKPPVAPQPKEQVAAVDSNTKETHAQRRFQLSS
LNPQERIDYCHLIEELGAVVLDRQCFDPSCTHIIVGQPLRNEKYLASMAAGKWVLHRSYL
EACRAAAKFVQEENYEWGSSSILDVLPGISVQQKKLAVAAMRWRKNLELLRQRNPTAEIG
AFTGWKVILNFDHAKEAGFRRLLLSGGAKVLPNHLLHEYKDATHLFADFSKLKPEDPKVN
LAEAIEHNVMCLKPEYIADYLIQEHPPPAENYYLTAESGMGTRKRKSSGDDSDPRKCRKN
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgccgagctctgccaagtcagaaccttttcttgtaaaattcataaaatcaaaagggaaa
gattctgaatatttcacgaaagcatataaggctattaaagaatttaaatctgaggatttt
ctgcagatgatacatgaagatgaagtatttaacttgaaagtaaaagacagctcactttat
atatgtgatccatttgagggagatgcttacaatcacctgaaaaagcttggatgtagaatt
gttggcccacaagtggttgtattttgtcttcagcaacaacagagtgtacctgaagctgta
catcctgtctacagtatggtcatggctgatgtggtggtttcatgcaccagtttggataag
caaaccagggatgatgtacataaacaagtacaactgatgggtggtcggatccttcgagat
ttcaacatctcggtaactcatctgatagctggagaggttggaagcaagaagtatttagta
gctgccagtctgaaaaagaaaattttacttccatcctgggttaaggcatgctgggaaaaa
gctaaaaagggcatcattagcctgacagatgtggatatggaggagcacctctgtcctccg
ttccttggctgcacagtctgtgtaactgggctgagtagccaggacagacaggaagtacag
cggcttaccttggagaatggaggccagtactctgggcagctgaagatgaatgattgcaca
catttgattgtgcaagaacctaaaggccagaagtatgaatgtgcaaaaaaatggaatgta
tactgtgtatccatccaatggttcttcgattctatcaagcatggtacttgccaagatgaa
agtaattataaagttgaatctgaaactaaacctacagaggtagctccaagcacttcaact
cctacgaacttgggagatgcactgagctcccgacccctctcagatgtgagtcatatttcc
aatattagcacaagctgtataaatgaatctgcgttctcctctgccatggttgctaaactt
gaagctcctgatgaccatcttgaggcaatagatattgatctttctgaagttcctgaggac
ttgctagatggatgtaaaatctatttgactggatttagtggcaagaaattggataaatta
aggcggatgatcaattttggaggtggtattcgatttaatcaagtctgtgaagatgttacc
tacataatcatgggagaagaggataaggagttaaaacactgtctaaacaaaatatcaaac
aggccgtatgtggttacagcaagatggttagtggactgcttttccaagaagtgccttctt
cctgtggagcagtatttccatccaagctatcaacctgatattccaataccgcaacgttcc
agtaaccaagctcatttgactttaaatggcagtaaggcacgacgcacatccacagtcagt
cctgacggacagcaggaagcagatgatgatctcctgttgcagtaccttgagaacgacaaa
tctgtagttgaatctgaaaatcaagataaaacacgaaataacttgagtgacactcttcac
aaaactgagtaccaaaacaatcagtcagcaaatacctccatctgtgaaacagaatcatgt
gctgagcagggaatcttttggaaaaagaagtttctaatatttggctttgctaatgaagat
gaaacctatatggctgaattaattcagagcaatggtggaaaagtgctgcggccccacagt
cgaattgttgctgactttgctgtcgtgcctttattaggcactcaagtagacgcaactgta
gcagaagtggttacaaacacgtggctggcgatgtgcattgatcagcaacgtatactggct
tcacagtcaaatgccttattcactcctatatctgttgtggaaggaagcacaccattgact
aactgtgtgttgtctattagtcaatttactggagttgaaagagatgcactatttaatatt
gcagaactacttggagcacaagtgcaagagttttttgttcggaaagcaaatttgaagaaa
ggcatgcttgccagcactcacctggtcctacaggagccacaaggctccaaatatgaagct
gcaaagaaatggaatttaccagctgtgactgcatcttggttatttgcgtctgctcaatca
gggaaaaaagctgatgaaagcaaattctctgtggaaaatgctgtcagtgctgttgctgaa
gtgaatcagcagagcaaggcctccaatgtcgacaaagtgcaacaacagacacccgagcat
cccttatccaaactgaaaagcatgcagagctctgttgtcactccactggatataaagaga
ttccagagtaaagccttccaattggtcttatctcaacaaaatagaactgagacaacagaa
acaagagcagaagtaggagtacccagccaacagagagaagccaacttgctacttgacaca
ccttcaaaattcctgtgcaaggacaaactgttcaagccatcatttgatgttcaggatgca
ttagcagttctggaaactcctaagaatccagatcagcgtaacagaaagatgagtactcca
ctatccgaagtcattggcaggaatctaaaagtagccctggcaaatagtacacggaacaca
atagtgccaacagcagccagtccacaacttcatgtgtctaaaccagcacaggaagagcct
aaagttctggcagacgtagtaatttgtgtgagtaagaagcttggtaagaaacagggggat
ttgaatgcaattgcagcctccctgggagcagattacagatggagtttcgatgaaacagta
acccatttcatctaccaaggacggcagaatgacagcaatcgagaatacaagtctatcaaa
gaaaagggcatacacattgtctctgaatattggctatttgcatgtgctgatgaacagagg
aaggtgcctgaatctctctatcctcacacgtataatccaaatatgagtttggatatgagt
gcaattcaagaaaccagagtgtccacacagatgtatctttctcaagcaagatgcagagaa
gaacagacttctgacatgccagaggctgaggaactagaaagcgaaaatgacgaacagctg
aaagttgggagaactctccaagatgaacaaagcgaagaatgtggagatttgactgaaact
tcagaaatgagagagaatttccaacgtcagttacaagaaataatgtctgctacaagagtg
gagaggtcagtagggcaccgtggagccatgtcaagaggagcactggagtactctcccaca
tcagctgatagcgcagttcgttctggacggagcagagcgctggaatccctcaggcgctca
cattcagcagttgcagaaatcaatacagagccatcacagaatgagcagattatctgggat
gatccaacagccagagaagagagagccaaactagccaataacatgcagtggccaggcagc
ccctctcagtgctctgagcaatttcagaaaaatacagagcaagtggaggaaagaaatgca
aaacacaaagactctttaactgattcagaaattgctgcaatagaaattcctcagtgtctt
cctgtaacaaatggtgacattctgatgaaggatgatcgtctcacccctacacctcaggct
cctagtatagcatttccactgacaaaaccacctgtggcaccacagcctaaagaacaggtt
gctgctgttgacagtaatactaaagaaacacacgctcagcgcaggttccagttatcctca
ttgaaccctcaggagcggattgactactgccatcttattgaggagttaggtgcagtagta
ttagatagacaatgctttgacccatcctgcacgcacatcattgttgggcaaccattacgt
aatgaaaaatacttggcttctatggcagctgggaaatgggttcttcatcgatcgtatctc
gaggcatgcagagctgctgccaaatttgtccaggaggaaaattacgaatggggcagcagt
tccatcctggatgtgttgcctggaattagtgtccaacagaagaagcttgcagtggcagcc
atgagatggaggaaaaacttggagttgctaagacaaaggaatccaactgctgagattggc
gcatttactggttggaaagttattttaaacttcgatcatgccaaggaggcaggtttcagg
cgtcttcttctttcaggtggagccaaggtacttcctaatcatttgttacatgaatacaaa
gatgccactcatcttttcgctgacttcagcaaactaaaaccagaggatccaaaagtgaat
ttggctgaggctattgaacataatgtgatgtgcctcaaaccagaatacattgcagactac
ctcatacaggagcatcctcctccagctgagaattactacctaactgctgagtctgggatg
ggaactcgtaaacggaaatcatctggagatgattctgatccaagaaagtgtagaaaaaat
tga
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integrated database retrieval system
