Chiloscyllium plagiosum (whitespotted bambooshark): 122564597
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Entry
122564597 CDS
T08871
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04020
Calcium signaling pathway
cpla04080
Neuroactive ligand-receptor interaction
cpla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
122564597 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
122564597 (grin1a)
04082 Neuroactive ligand signaling
122564597 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpla04040
]
122564597 (grin1a)
Ion channels [BR:
cpla04040
]
Ligand-gated channels
Glutamate (ionotropic)
122564597 (grin1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Rap-GAP_dimer
DUF6724
Motif
Other DBs
NCBI-GeneID:
122564597
NCBI-ProteinID:
XP_043575621
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Position
30:complement(3933365..4118914)
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AA seq
929 aa
AA seq
DB search
MDRLIRLLLGFLAVFPLQSQAAPKVVNIGAVLSTKKTENIFREAVAQANRKHGTYKIQLN
ATAVTHKPNAIQMALAVCEDLISSQVYAILVSHPPGPSDHLTPTPVSYTAGFYRIPVIGL
TTRMSIYSDKSIHLSFLRTVPPYSHQAQVWFEMMRRFRWGHIILIVSNDHEGRAAQKKLE
TLLEEKESKNKKRNFENNDQHSYDSRRGPKAEKVLQFEPGTTNMTSMLLEAKELEARVII
LSASEDDAVTMYKTATFLNMTGPGYVWLVGEREISGRAMQHVPEGVIGLQLIDGKNETAH
INDAVGIVAQSIHELFEKENITDPPKGCVGNTNIWKTGPLFKRVLLSTKYREGFTGQVEF
NDEGDRKFSNYSIVNVQKGKLVQIGVYNGTNVLLNDKKIIWPGGELNTPKGFQMSTKLKI
VSIYQEPFVYVKPTLPDGTCEEEYTISGDPIKKVICTGPNATVPGHPIVPQCCFGFCIDL
LIKLASTPTLNFTYEVHLVQDGKFGTQERVNNSNKKEWNGMMGELLSGLGDMIVAPLTIN
NERAQYIEFSKPYKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYENAADAIQAVRDGYQGIFDNGQQYIGKPFPGVYYMEIDPYLIIISLAML
TKSVFSFHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIF
IEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSGSAEPDPKKKAPFRSLTSTLTSSFK
RRRSSKDTQYHPDISGQLNLSDPSVSTVV
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtctgatccggctgctgctcggcttcctcgccgtgttccccctccagagccaa
gcagcgcccaaagtggtgaacatcggcgcggtgctgagcaccaagaagacggagaatatc
ttcagggaggcggtggcgcaggcgaaccggaaacacggaacctacaaaatccaactcaat
gccacggcggtcactcacaaacccaacgctatccagatggccctggcagtgtgtgaagac
ctgatcagcagtcaggtttacgcgatattggtgagtcacccacccggcccaagtgaccac
ctcacccctactcctgtgtcttatacagctggcttctaccgaattcctgtcattggcttg
accacacgcatgtcaatatattcagataagagtatccatctctcttttctccgcactgtg
ccaccgtactcccatcaagctcaggtctggtttgaaatgatgaggcgtttccgttgggga
cacatcattctgatagttagcaatgaccatgagggccgggcagcacagaagaagctggag
acactcctggaagaaaaggagtcaaagaataaaaaaaggaactttgaaaacaacgaccaa
cattcgtatgacagcaggcgaggaccaaaggctgagaaggtcctacagtttgaaccaggc
accacaaacatgacatcaatgctgctagaagccaaggagttggaggccagagtcatcatc
ctatccgccagtgaagatgatgctgtaacaatgtacaagacagcaaccttcctgaatatg
actgggcctggctatgtttggcttgttggggaaagagagatatctggcagggccatgcag
catgttccagaaggtgtaattggtttgcaactgatcgatggtaaaaatgaaacagcccac
atcaatgatgcagtgggtattgtggcacagtccattcatgagctctttgagaaggaaaac
atcaccgaccccccgaaaggttgtgtagggaacactaacatctggaaaactgggccactt
ttcaaaagggttctgctgtccaccaagtatcgtgaagggttcactggacaagtggaattt
aatgatgaaggggatcgaaaattttccaactacagcattgtcaatgtgcagaaagggaag
ctagtgcagattggagtgtacaatgggaccaatgttctgctgaacgataagaaaatcatc
tggccaggtggcgaactaaatacacctaaaggctttcagatgtcaactaaattaaagatt
gtcagtatttaccaggagccttttgtatatgtgaagccaacactaccagatggaacatgc
gaggaagagtatacaattagcggggaccccattaaaaaagtgatctgtaccggaccaaat
gcaactgtgccaggtcatccaattgtccctcagtgctgttttggattctgtattgatttg
ctgatcaaactggcgagcactccgaccctgaacttcacctatgaggttcatcttgtccaa
gatgggaaatttggaacacaggaaagagtgaataacagcaataagaaagaatggaacggg
atgatgggcgagctgctgagtgggcttggtgatatgattgtcgcccctctaaccatcaat
aatgaacgtgcccagtatattgaattctctaaaccctacaagtaccaaggactcaccatt
ctagtgaagaaggaaatacctcgcagtaccctggattcattcatgcagccatttcagagt
acactgtggttgctggtgggcctgtctgttcatgtggtagctgtcatgctttatctcctg
gatagattcagtccctttgggagatttaaagtgaacagtgaggaggaagaggaagatgcg
ctgaccctgtcctcagccatgtggttctcctggggtgtcctgctgaactctggaatcgga
gaaggggcccccaggagtttttctgctcgaatcttgggcatggtttgggctggctttgcc
atgattatcgttgcttcatacacagccaacctggcagcttttctggtgttggaccgacct
gaggagcggataactggaatcaacgatcccaggcttcgtaatccttctgataagtttatc
tatgctacggtgaagcagagctcagtggatatttacttccgtaggcaggtggaattgagc
accatgtaccggcacatggagaaacacaattatgagaatgcagctgatgctatccaggct
gtgcgagatgggtatcagggcatttttgacaatggacagcagtacattggcaaaccattt
ccaggtgtatactacatggagattgacccatacctcatcatcatctcactagccatgctc
accaaatctgtcttcagtttccatgaaaatggttttatggaggacctggacaagacctgg
gttagatatcaggagtgtgactcacgtagcaatgctccagccactctgacctttgaaaac
atggcaggtgtctttatgttggttgctggcgggattgttgcaggaatatttttgatattc
attgaaattgcttacaaacggcacaaagatgctcgaaggaagcagatgcagctggctttt
gctgctgtcaatgtctggagaaagaatttgcaggatagaaaaagtggtagcgcagagcct
gaccctaaaaagaaagcaccttttagatcgctcacttcaacactgacctccagcttcaag
agacgtaggtcttccaaagacacgcaataccatcctgatataagtgggcaactgaacctc
tcagacccttctgtcagcacagtggtgtga
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