Chiloscyllium plagiosum (whitespotted bambooshark): 122564621
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Entry
122564621 CDS
T08871
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122564621 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122564621 (col27a1b)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122564621 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
GH131_N
Motif
Other DBs
NCBI-GeneID:
122564621
NCBI-ProteinID:
XP_043575645
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All DBs
Position
30:42049398..42601244
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AA seq
1470 aa
AA seq
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METAAGLDTNSKAAAAFGGRALILCAVLCCTCYLGLAQVLPEDVDILQRLGLIGKKAQTL
ASPSSMTFRSVPQGVIPFKLGVILTPRARIKAPVAAVIPASYGTNLTLVLSVCSHRVNNA
FLFTVRNKRKRLQLGMQFIPGKIIVYVGHKQSVYFDYDVHDGQWHDMAITIRSRKVTLYT
SCGKNRTHANLHFKKEDSLDPEGSFLLGKLDQHSVQFEGAVCQFDIYPSAKAAHNYCKYI
KKQCRQADIYRPNLLPLLPLLPPFPNSSAPSPSPLTLRKRSGPANSFSESVALLGLAPTS
PNLSPWTVRRTAFGATAPPAVLPIQQQQAATTIRPKPLRSTTPVPSVGFLQLTPHAEATA
PTPARSTGKGSTTSENQQGLPRRAPAGAAAKQDSRGRATPTGHATATPTWHARATPTGHA
RATPTRHATTTPTGHVPAPPPTATVPATRKTERQTAKTWRPASKEAVGRETEPIPATTPS
YPRVTYSVVSVTPAATDGYQTFGMESFTVDPMLQGLPGIKGDPGPMGPPGPPGLPGSPGK
RGPRGRQGPHGNPGRPGPPGVKGNKGEPGISPGKALNGQKGDVGRPGAVGLPGPPGRKGQ
KGYPGPSGHPGDPGVRGPNGSRGAKGYPGRQGLPGPMGKQGPKGFRGFIGPRGLIGLPGA
DGKQGIPGEAGKRGKMGRPGFPGNFGERGSPGMDGSPGDLGAPGPPGVRGLVGDMGRLGK
MGLPGQRGPKGLIGNRGEPGLKGDKGDEGIPGIPGETGFPGDKGNPGIQGMPGMRGKPGI
TGKIGEKGPVGIPGPPGLEGFPGDIGLPGQNGPEGPKGKPGARGLPGPQGQPGLEGDEGR
MGPLGDPGPEGRPGRRGFPGKPGPDGPKGEPGDTGKVGKVGEQGQPGFMGPIGELGKVGE
KGDRGETGPPGRPGVKGAMGHPGPPGELGPPGPIGPPGAKGVRGAPGMRGTKGRRGARGS
DGLTGEPGPKGIKGSVGKPGRTGPGGQRGKRGEPGETGATGFPGIPGPSGAPGAKGIPGE
PGPPGPEGMIGLLGEMGPKGLPGPTGEPGLPGDPGEKGAIGLPGARGEPGLMGQRGEPGL
VGDDGPVGIDGLKGDKGDRGEEGDKGDKGPEGLKGKEGPPGVPGMTGVQGPEGKPGKPGE
RGKPGRKGSKGHLGHLGETGPPGDPGPEGTQGPKGSRGTRGALGAPGRMGAQGEPGIAGY
EGHKGPLGPKGPPGPKGEKGEHGDDGKVEGPPGPPGDRGPIGERGERGEPGDPGYVGQRG
LDGERGKQGQQGLPGNPGPPGKPGVKGSKGQAGRKGKTGSQGVQGSPGPPGPIGPPGSRG
VIGRQGHEGPPGLDGAPGITGKPGIQGEQGDDGNVGFLGKPGGRGRVGVPGLPGSQGSPG
FKGERGLQGQAGPPGIKGIEGGMGLPGKRGDPGSKGQPGDPGESGFPGLMGVFGPKGHPG
DVGFTGIQGPKGPPGLMVSNQLLQGHASRE
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggagacggcagccggactggacaccaacagcaaggctgctgctgcctttggggggaga
gccctcattctctgtgctgtgctatgttgtacttgctacctgggacttgcacaagtactg
cctgaagatgtggacattctccaaaggctgggccttattgggaaaaaagcacaaacactg
gcatcgccatcttccatgacgtttcgctctgttcctcagggggtcattccttttaaactg
ggcgtcattctcacaccgagagctcgcatcaaagcacctgtagcagctgttatccctgcc
tcctatggcactaacctcaccctcgtcctgagcgtgtgctcccaccgtgtcaacaatgct
tttctattcaccgtcaggaataagagaaagagactgcagcttggcatgcagttcattcct
ggcaaaatcattgtgtatgtgggacacaaacagtctgtctatttcgattacgatgtccac
gatggccagtggcacgacatggccatcaccatcagaagtcgaaaggttactctatatact
tcttgtgggaagaatcgcactcatgcaaatttgcatttcaagaaagaggattctttggat
ccagaaggttcctttcttctggggaagttggaccaacactcggtgcagttcgaaggagct
gtctgtcaatttgatatttatccctccgctaaggcagctcataattattgcaaatacatc
aagaaacagtgcaggcaggctgatatttaccggccgaacctcctccccctcctccctctt
ttgccgcctttccccaattcctctgccccgtctccttctccgttgacgctgcggaagagg
agcggaccggcgaacagcttcagcgagagcgtggctttgctgggcctggccccgacgtcg
ccgaatctcagcccctggaccgtcaggcggacggcgtttggcgccacggccccgcccgct
gtgctccccatccagcagcagcaggccgcgaccaccatccgtccgaagccgctgagatcc
actacccccgtcccgagcgttgggttcctccagctgacccctcacgccgaggccacggcg
cccaccccggccagatccacggggaagggcagcacgacgtcggagaaccagcaagggctt
ccccgccgagctcctgccggcgcagccgcaaagcaagactccagagggagggccacgccc
actgggcacgcgacggcgacgcctacttggcacgctagggccacgccgactgggcacgct
agggccacgcctactaggcacgcgacgaccacgccgactgggcacgtgccagcaccccct
ccaactgccaccgtgccggccacgcggaagaccgaacgccaaaccgccaagacctggagg
cctgcctcgaaggaagcagtgggccgggaaactgagccaataccagccacaacgccatcg
taccccagagttacctatagcgtggtgtcggtaacgcctgctgccacagatggataccag
acctttgggatggaaagctttactgttgacccgatgcttcaagggctcccaggtatcaaa
ggggacccaggcccaatgggtcccccaggacctccagggttaccaggttcacctggaaaa
cgaggaccccggggacgccaaggaccacatggaaacccaggtcgccctggtccccctggc
gtgaagggaaacaaaggcgaaccaggaatttctccagggaaggcactcaatggacaaaag
ggtgatgtgggtcgacctggtgctgttggactcccagggcctcctggtagaaaggggcag
aaaggttaccctggaccatcgggccatcctggagacccaggggtgcgtggacctaatggg
agtcgaggtgccaaaggttatcctggcaggcagggtttgccaggaccaatggggaagcag
ggaccgaaaggctttcggggcttcataggcccacgagggttaattggtcttccaggagca
gacggaaagcaaggaataccaggagaagcagggaagaggggcaagatgggtaggccggga
tttccaggaaattttggagagaggggatcaccaggcatggatggaagtccaggagatttg
ggagccccaggacctcctggcgttcgtgggctggttggggatatggggcgtcttgggaag
atgggcttgcctggacagcgaggaccgaaggggctgattggaaaccgcggagaaccagga
ctgaaaggtgataagggtgatgaaggcattccaggaataccaggagaaacgggtttccct
ggcgataagggcaacccagggatccagggaatgcctggaatgaggggaaaacctggaatc
actggtaaaattggtgaaaaaggtccagttggaataccaggacctcctggtcttgagggt
ttcccaggagacatcgggcttccagggcaaaatggtccagaaggccccaagggaaaacca
ggagcacgaggcctacctgggccacagggccagcctggtctagagggcgatgaaggtcga
atgggaccactgggtgatccaggccctgagggacgtcctgggaggcgaggatttcctggg
aaaccaggacccgatggcccaaagggtgaacccggcgatactgggaaggtgggaaaagtc
ggagaacagggacaaccaggattcatgggacccattggcgaactcggaaaagttggagaa
aagggtgaccgtggtgaaacgggtcctccagggcgtccaggagttaaaggggcaatggga
catcctggacctccaggagagcttggacctccaggaccaattggaccacctggtgccaaa
ggagttcgaggagcacctggaatgagagggacaaagggccgcaggggtgcacgaggttct
gatggtctgacaggggagccaggtccgaaaggtatcaagggatctgtagggaaaccaggc
cggactggaccaggtggacagaggggtaaaagaggggaaccaggagaaacaggagcaaca
ggttttccaggtattcctggaccttctggtgctccaggcgctaaaggaatcccgggagag
ccaggaccaccagggcctgaggggatgattgggttgctgggggagatgggaccaaagggg
cttcctggcccaactggagaacctggactcccaggtgaccctggagagaagggtgcaatc
ggactgcccggagccagaggtgagccagggctcatgggccaaaggggagagcctggcctg
gtgggagatgatggaccagttggaatcgatggactcaagggtgacaagggtgaccgaggg
gaagaaggagataaaggagacaaggggccagagggattgaaaggaaaagaagggccacca
ggggtaccaggaatgaccggagttcaaggacccgaaggaaaaccagggaaacctggagag
agaggaaaacctggcagaaagggtagtaaaggtcacttgggacatctaggagagaccgga
cctccaggagatccaggacctgaggggacccagggaccaaagggatcccgaggcacacga
ggagctctgggagctccaggtcgcatgggggctcagggtgaaccaggaatcgcaggctat
gagggacataaaggaccactgggaccaaaaggaccaccgggcccgaaaggtgaaaagggt
gaacatggggatgatgggaaagtggaaggtcctcctggcccccctggagataggggccca
atcggagagcgaggagagagaggtgaacctggagatcctggttatgttggccagcgaggg
ctggatggagagagggggaaacaaggtcagcaaggtttaccgggtaacccaggacctcca
ggtaaaccaggtgtgaaaggttcgaagggtcaagcggggcgcaagggaaagacaggttcc
cagggcgtgcaagggagtccaggcccaccgggtcctatcgggccacctggttccagaggt
gtcattggtcgacaaggtcacgagggtcctccaggactggatggtgctcccggaatcact
ggcaagcctggaatacagggagaacagggggatgacgggaatgtcggattcctcgggaaa
cccggaggccgtggtcgtgttggtgtcccaggattacctggatctcagggatcccctggc
tttaagggagagagaggcttgcagggccaggccggacctcctgggatcaaagggatagaa
ggaggaatgggcctgcctggaaagagaggcgatccaggttccaaaggtcaaccgggggac
cctggagaatctggcttccctggactgatgggagtgtttggaccaaagggtcacccagga
gatgttggatttactgggatccagggtccaaagggacctccaggattaatggtaagcaat
cagttattgcagggacacgcatctagggagtga
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