Chiloscyllium plagiosum (whitespotted bambooshark): 122564732
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Entry
122564732 CDS
T08871
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122564732 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122564732 (prpf4)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122564732 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
122564732
NCBI-ProteinID:
XP_043575802
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Position
30:complement(5581050..5623310)
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AA seq
524 aa
AA seq
DB search
MLWLWSRALLSFLLHITRMSDDDDAPLPKKSRIYYGSLEEKEKERISKGDGGYLGKDAVK
AGIEAGHINVSSNEFYEVEDHVSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGE
PITLFGEGPAERRERLRNILSVVGADALKKTEKTEDAKKSRQEHQQTWYHEGPSTLKTAR
VYIARFSLPRAVKRLEEARANKEIPEASRTARQQELHKSLRALNNFCSQIGDDRPISYCQ
FSPNSKLLVTASWSGLCKLWGVPDCSLIRTLRGHSTNVGAIVFHPQATISLDEKDCNMAS
CAADGSVKLWNLESDEPVADIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEI
LHQEGHSKGVYDIAFHRDGSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGISFSPN
GYHTATGSGDNTCKVWDLRHRKCIYTIPAHQNLLSAVRFQPTDGHYLLTGAYDNTAKIWT
HPGWSPLKTMAGHEGKVMGLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgctctggttgtggtccagagctttattaagtttcctgcttcatattacaagaatgtct
gatgatgatgatgctccgttgcctaagaaatctcggatatactatggaagtcttgaagag
aaggagaaagaaaggatttccaaaggagatggaggatacctggggaaagatgctgtgaaa
gctgggatagaagctggacatattaatgtatccagcaatgagttctatgaggtcgaagac
cacgtcagtgagaggcaagcagaggtgctggcagagttcgaacgcagaaaacgagcgcgg
cagattaatgtttcaacagatgacgcagaagtgaaggcctgcctacgagcacttggagaa
ccaatcactctttttggggaaggaccagctgagcgacgagagaggttacgcaacatacta
tctgtggtgggtgctgacgctttgaagaaaacagaaaagacagaggatgcaaagaaaagc
cgacaggagcatcagcaaacctggtatcacgagggccccagtaccttaaagaccgctcgt
gtctacattgcccgcttttctctgccaagagctgtgaagcgactggaggaagcccgggca
aacaaggagattccagaggcttcacgaactgcgcgacagcaagagctccacaaaagctta
cgggccttaaataatttctgcagccagattggtgatgaccgacccatctcctactgccag
ttcagccccaactccaagctcctagttacagcttcttggagtgggctttgtaagctttgg
ggtgttcctgactgcagtcttatccgtacactgagaggtcacagcacaaatgtgggtgcc
attgtatttcatccccaggccaccatctcacttgatgagaaggactgtaacatggcatcg
tgtgcagctgatggctcagtgaaactctggaatctggaaagtgatgaaccagtagctgac
attgaaggacataccatgcgagttgctcgagtggcttggcacccctcaggcagattcctg
ggcaccacatgttatgaccattcctggcgactgtgggatctggaagctcaggaggaaatc
ttacaccaggaaggccatagcaagggtgtctatgacattgccttccaccgtgatggctca
ttggtgggaactggaggtctggatgcctttgggcgactgtgggatttacggacgggtcga
tgcatcatgttcttggagggacatctgaaggagatctatgggatcagtttctctcccaat
gggtaccatacagcaacagggagtggagataatacctgcaaagtttgggaccttcgccat
cggaaatgcatctataccatcccagcacaccagaacctcctgtctgcagtcaggtttcag
cccacagatggacattacctgttgaccggtgcctatgacaacactgcaaagatttggaca
caccctgggtggtcacccctcaaaaccatggctgggcatgagggcaaggtgatggggttg
gacatctctccaaacgggcagctgattgccacatgttcgtatgacaggaccttcaaactc
tggacatctgagtag
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integrated database retrieval system
