Chiloscyllium plagiosum (whitespotted bambooshark): 122564900
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Entry
122564900 CDS
T08871
Name
(RefSeq) transcription termination factor 1-like
KO
K15225
transcription termination factor 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122564900
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription termination factors
122564900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_4
HTH_SUN2
Motif
Other DBs
NCBI-GeneID:
122564900
NCBI-ProteinID:
XP_043576268
LinkDB
All DBs
Position
30:34814002..34851564
Genome browser
AA seq
1211 aa
AA seq
DB search
MDTEQNLNTQLYVGNSEKKHKKKKGYSALLSKYDNLETVTVDTKHDLSDFLCVGNSKKKQ
KRKKNHSASLEGCDSSEIHTVDSEQDIKNLLFVDNSEKKHKKKKDCSALLLGYDHLETVP
ADVEQDLNHFTSVGNSGKKRKKKKDCSASLTGCDSSEIHTVDSDRDINNLLFVGKSAKKH
QIKHFSDLSSGYDNVETVTAENEQDLNHFTSVSNSGKKRKEKRGHSASLGGSNSSEMHAV
DSEQGLNNILFVDNSEQKHKKKKDCSALLLGYDNLETVPADTEQNLNHFMSIGNSGKKQK
KKKDASASLGGCDSSEIHTVDSDQDINNLLLVDNCEKEWKHQKNKRRNSKLGNKDDDSDM
QNPCKSDLGENKLQGKKKKYAVALEPCDVSETVLVDDQDLQIFQLPQSNKNKLKKRKKDR
NSSIFSEECDSSDMQNLQLGGNGEKRKKNHLCGSLITEATTHMSSTEMKKEGQHSELMGN
QGNQMNKLIHHSYSGETGVSVSAVKTKQILQNAGLVENGDNERDPHVTAVKTAKEITTKE
TPHTIRNPELLTKSKCHSHRTEERVRKNYCKSAEGSDDLETCAEAHLESAISAYVGVDTE
TSTKKCKRRKKKMQFENINRDVPPSGSEIPQKPIKQCKISNILSFGNYSADLLGINNKSF
QKPKLSCNGSENVEKEAKVPSKAVNISGVAAITGEQIEQIVHDSSTTCEETVKTSKNYIQ
KRGRPLGCKNSGRPKKLTQDGTTQSPATLRRQKNKQPQQRMTELNNNASITTVENFKLEE
VPVCQDKAKCSQMDKSKLTELLKDYIPNVEKLTNDTLYSIYKYDLPRFQKFKAEGISIRQ
GKFTEQENQQLQKNLKELMELTGIRNEWDLLHVPESVEEMLRIRRLKQNNLFCCKLAENI
PRPWKCVYQRAKRMYHPHRCKGRYSKEELNKLQRLQMQYGNHWKKIAQFMERSDGSVICR
AKTMKNSLKIGPWSKEEERALMNIMEQLMRKKIQEAPYSPMSTVPNSNAFISILREKLYR
EIPWFAVADKMEHRNWTQCRQKWMNILTTKMSGGVRPIRFHHHQSRINLIKRLYLLNIDD
VGDVDWEDLCSAVGDVPPLFVQKMFYKLKVRYVPDWPKKSFGGIVDFLHDQIVPKLEEII
KKKEDQCNFNVSSDSYQSLQHEFKLSDIFDDDDDDDDEKDEIEKIDELEEMIGTSFQSQS
EKPVENRPHIT
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggacacggaacaaaatttaaacactcaattgtatgtaggtaatagtgaaaagaaacat
aagaaaaagaaaggatattctgctttgttgtcgaagtatgataatttggagactgttaca
gtagacacaaaacacgacttaagcgattttctgtgtgtaggtaacagcaaaaagaaacag
aaaagaaagaaaaaccattctgcatcattagagggctgtgatagttcagagatacataca
gtggacagtgaacaagacataaaaaatctcctgtttgtagataacagtgaaaagaaacat
aagaagaaaaaggattgttctgctttgttattggggtatgatcatctcgagactgttcca
gcagacgttgaacaagacttaaaccatttcacatctgtaggtaatagcggaaaaaaaagg
aagaaaaagaaagactgttctgcatcattaacgggctgtgacagttcagagatacataca
gtggacagtgatcgagacataaacaatcttctgtttgtaggtaaaagtgcaaagaaacat
cagataaagcatttttctgatttatcatcaggatatgataatgtagagactgttacagca
gagaatgaacaagacttaaaccatttcacatctgtaagtaatagcggaaaaaaacggaag
gaaaagagaggccattctgcatcattagggggcagtaacagttcagagatgcatgcagtg
gacagtgaacaaggcttaaacaatatcctgtttgtcgataatagtgaacagaaacataag
aagaaaaaagattgttctgctttgttattgggctatgataatcttgagactgttccagca
gacactgaacagaacttaaaccatttcatgtccataggtaatagcggaaagaaacagaag
aaaaagaaagatgcttctgcgtcattggggggatgtgatagttcagagatacacacagtg
gacagtgatcaagacataaacaatctcctgcttgtagataattgcgaaaaggaatggaag
catcagaaaaataagaggcgcaattctaaattgggaaataaagatgatgactcagatatg
caaaacccctgcaaatctgatcttggtgaaaataaactacaggggaagaagaaaaaatat
gccgtagcattagaaccatgtgatgtttcagagactgttttggttgatgatcaagactta
caaattttccagcttccacagagtaataaaaacaaactgaagaaaaggaaaaaagacaga
aacagttcaatattcagtgaagaatgcgacagttcagatatgcaaaatcttcagttagga
ggtaatggtgagaaaagaaaaaaaaatcatctttgtgggtcactgataacggaggctaca
acgcacatgagctctacagagatgaagaaagagggtcaacattctgagttgatgggtaat
caaggaaaccaaatgaataaactaatacatcattcctactcaggtgagactggtgtttca
gtctctgcggtaaagactaaacaaatactgcaaaatgccggattagtggaaaatggtgat
aatgaaagagacccccatgtcacggcagtaaaaactgctaaagagattacaacaaaagag
accccgcacacaatacggaatcctgagttactgactaaaagcaagtgtcattcccatcga
acagaagaaagagttaggaaaaactattgtaaatcagcagaaggtagtgacgatttggag
acttgtgcagaggctcatctagaaagtgcaatatcagcatatgttggtgttgatacagaa
acatcaaccaaaaaatgcaaaaggagaaaaaagaaaatgcagtttgagaacataaacaga
gatgtcccccccagtggatctgaaattcctcaaaagcctatcaagcaatgtaaaataagc
aacattttgtcatttggaaattatagtgcagacttactgggaataaataataaatctttc
cagaaacctaaattaagttgcaatggaagtgaaaatgtagagaaagaagcaaaagtacct
tccaaggctgtgaatattagtggcgttgcagcaatcactggagagcagattgagcaaata
gtgcatgattctagcaccacttgtgaagaaactgttaaaacctccaagaactacatacaa
aagagaggccgtccacttggatgtaagaattctggcagacccaaaaaattgacgcaggat
ggaactacacagtctcctgcaactttaagaagacagaaaaataaacagccacagcagcgt
atgacagaacttaataataatgctagcatcacaactgttgagaactttaagttggaggaa
gtgcctgtttgtcaagataaagctaaatgtagtcagatggacaaatcaaaattgactgag
ctgcttaaggactatatccctaatgtggaaaagctgacaaatgatacgctgtatagcata
tataaatatgaccttccaaggtttcaaaagtttaaagctgaaggaatttccatccgccaa
ggcaagtttactgagcaagagaatcaacaattgcagaaaaacctgaaggaattaatggag
ctaactggaattcgaaatgaatgggacctgttacatgttcctgaatccgttgaggagatg
ttaagaattagacggctgaaacagaataatttattctgttgcaaactagctgaaaatatt
ccaagaccatggaagtgtgtttatcagcgagctaagagaatgtatcaccctcatcgatgt
aaaggcaggtactccaaagaagaactgaacaaattgcaacgtttgcaaatgcagtatgga
aatcactggaagaaaattgcacaattcatggaacgttctgatggatctgttatatgccga
gcaaaaacaatgaaaaattctttgaaaattggaccttggagcaaggaggaggagagggcg
ttaatgaacataatggagcagctaatgagaaaaaagatacaagaggcaccctatagtcca
atgagtacagttccaaattccaatgcatttatttcaattctgcgtgaaaagctatacagg
gaaattccttggtttgcagttgcagacaaaatggagcacagaaactggacgcagtgtagg
cagaaatggatgaacattctgactacaaaaatgtctggaggagtgagacctattcgattt
caccatcaccagtcaagaattaatctcatcaaaaggttgtacctgttgaacattgatgat
gttggtgatgtcgactgggaggatctttgtagtgctgttggagacgttcctcctttattc
gttcaaaagatgttttataaattgaaagttcgttatgtacctgattggcccaaaaaatcc
tttggaggaattgtggactttttgcatgatcaaatagttccaaaattggaagaaataata
aagaaaaaggaagaccaatgcaattttaatgtttctagtgattcttatcagtcactacag
catgagttcaaattaagtgatatttttgatgatgatgatgacgacgatgatgagaaagat
gaaattgagaaaatagatgaattggaagaaatgattggaacctcatttcagagtcagtca
gagaaaccagttgaaaatcgaccccacataacatga
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