Chiloscyllium plagiosum (whitespotted bambooshark): 122564902
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Entry
122564902 CDS
T08871
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122564902 (setx)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122564902 (setx)
5.6.2.5 RNA 5'-3' helicase
122564902 (setx)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122564902 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
AAA_22
AAA_16
NAT10_TcmA_helicase
ResIII
nSTAND3
zf-C2H2_AHC1
Motif
Other DBs
NCBI-GeneID:
122564902
NCBI-ProteinID:
XP_043576272
LinkDB
All DBs
Position
30:34856166..34957972
Genome browser
AA seq
2789 aa
AA seq
DB search
MSTCRWCTPQGKTTLQFLHLYSSEELPPQEFQAANEDLCFCLECVVDYHQARDQLPLIHT
YLWKLETKRLIEHFESALKEEQEEDDELFLIEDEQEIQLHGYTGPDFENNLRVPILEILK
YPYLLLHERLSELFVEALSKMEQVNFSFQAFEMYPGIYLLLVHPNETIRRWAILAAKSLG
KVERDDFYDLQEVIACLLKVIELDLFENTDFYNSYGIEEGKLILLPPHLYDVTNHKNYWL
GICMLLMVLDEQAMDSLLLAQDKQNDFVKSILNTMMKSKPDDVSDPFWPALQCFMVILDR
LGSKVWGQLIDPTEAFQAIIGSQSYNNEIEKIRNTRNNTKVKYDTDDDNMVSCSQIVYDY
NSKRESKDPGWKNAICPDYYPNMYDEMQTLVNVLQCDVGQDMRVHNSTFLWFIPFVNSVM
DLKDLGIAYIGEVIHHIYSEIKDVLNRKVAFCDKVTEFFILILVSVVELHRNKNNLHLLW
YSSQKWVEALVKCAMLPARVFNQNSEKAAGTSNVKVTSTTFAAMSSAACSCITSSVQQAC
VQLIRSFLKEGCQSQQRNMFQQFLDKLNRQLRSSFILGWQLSPKEQQELQSCLTQFIKNS
KSKTAEMKQIDTVGRGSGLKGPLIKCEKDPKEWGKMPACYNSGPGPPSPSMLKLDCKGSA
IPKAIPNQEEMTDHKSLENKPKESSEEAVLPFKTEFTLYDDITFLNKINTDSSNTHEEEL
PTHVTKMETSPPLRSHSLDDVTVDFPQSRQRQIREQAGGLAPTSTSNVDFSASSLDKNNL
QAEPLEITHSVPRKEKWKRSMLLEFQESMNKNSTEPEAVSSEKDQHVISHVPSTSDHAET
DCDLPQTLESVSAGPSKFKIDPSKLFNLKVKMQAINLKMKEINNSSSKERTFEKIADAGA
DNRQSDKMNNRNSSHVPNVSKNQITDDETTESLLSSQVRTAQLSPISDKRAKSQSSDDLL
LSPLPESSSASKSSGLSNPLHDCHSNSSDSDDDIPFGLLKLKLKRRISSTSKVNRNDSKE
DEDFKPSLAVSTISTNLSSELPTELHTIQSLNKVDRKVKAFCQGQLCNSIQNKENFESDL
TMNKPTEDNNAELITISDSETSKEFTSSLIVSTSEAEKKDNATSIQCVFGVIEENQSCLQ
EKSVCNKSPPVFENDSQFFEFESEEQVYSVWEDSQPQPHNKKKTQLVDEFHRQSEEEEIN
SMLNEWGYDTDYVSDELIEKVAEEAEASLKGEQKRKRSSLDTEKQLSLRVSSLSSSTAKD
TPIDKSNVQHSGFTDDIVSNLQNEKEICSKTIISGINSLRSLIRSDKYKWMSKSTKELPD
DQQGSKLTVKNRADGFKNNLVSSKARAGEKQLSKATSSKDSNKSTLKKQSQCNGPDQKTR
FKNKTSKNSKEKASLVSLTNICKSLARDVQMEVPSTSVKHHSSSLPKKVRKRPEPTSTVE
KLGLKKKVRKAFDLSQGSLDTLNKLRTYGQKKGTIEHKHNKKAKLISPQKLTVRTNQRLL
VSQDRQYLRQSKLQLSNNEKKRKCTSTHDESTFPKKAVSTEGNSSFISASVQRSQKPKSA
SVETDNIYVAAPILLEKKHSKTIDVASTQQKLSSINAVDDLNLTQHDPLDMDVSTDESLD
DNELMLTQRDPIDMDIDDGNSEEEDSRRAPLSANETRCQYTGCSDIIVSSEKFCKQHSLN
EPKDIFPKPELPPSIWKSPKPATTKLFASNSTSRNAQLATEMQCVPKRPGGATSKVQQVQ
RPSVANLVSLASKPTPIMKTVETPNVLRTLNKDMNFRAQPSFQMSATALPTNAPLPPWKS
RQASPNVNLDLTEHRNRDQSYLINAVLKWDYQMFDSLSQFGVPDSLCEIPPREVPEKFRS
YEEYFQTFYPLLMLNLFEQLAQKLKESKQTNRMIHNSLTLKNYRVAGKIYCAEFQVSLRD
HQIEKQLHPKEDDVVFLWLPQNQNYYMQEEGEIMNNNPVPHISHISKTSRFSTGRDSLTT
LHLSIQTRGNVSAVKNQPVRCDVIGSLVTTLRQFKGLLFLAKTPLIRPILSANSIYFIQK
GFVERPKLDNTDDYNEHQQKAIHTAYAMVKQSRIPNICLIQGPPGTGKSKTIVGFLHRLL
NEEQENVKPSDSRNLRSKRTRILVCAPSNAAIDDLMKKIIVDFKSKCKDKNNALGNCGDV
NLVRLGCEKAIHSDVMKFSLDYQVNHRIKRGQYDADQRRKDWLDRKLDELGKRCAIIKKD
KEQIEVATREKRQLEKEREELGRKLKELRGQTQDMQLNIILEAHIICCTLSTCGIMLLEM
SFRKLGHEPFSCIVVDEAGQACETEILIPLIYRCPKLVLVGDHEQLPPTIISMKAKELRY
GRSMMCRLQKSLQNEVKQINSGWSPVIMLLTQYRMHPDICHFPSKYIYRSLLKTDEKTEM
QRCSLTWPFQSYMLFDVTDGYECRENDSYTNAQEVKLVIALISMIAEKQKGVCRNIGVIT
PYNAQKQKILNQIDQELRTAGLEQGRTVQVGTVDGFQGCEKDCIIVTCVRASNFQGSIGF
LADRQRLNVTITRARLSLFILGNLKTLLENKDWKALIQDAQKRGAIVKTSESDYKKDCQK
ILKPRSAVQRSISDPDALTGEQKQVPDLAWKSSWNETSMHSAADVSSGQFPKTLIPSQSV
SKHHLHNAQSSVTAQPEISVRSELSAQDKPRDPRLARRALLKETQPQLKVTRTFSESRVV
ISPDSSASGGGHGAIHSSNVSQPPRNSLCRIDVDKPYPSPLNRSLTFPSGSRNDQNTVYN
VSNCAGSWKQQQDEKAKGDRPGEQKQRYK
NT seq
8370 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttgtcgttggtgcacaccacaaggcaagacaacacttcagtttctacatctc
tacagttctgaggagctccctccacaggaatttcaagctgctaatgaagatctttgtttt
tgcctggaatgcgtggtggactatcaccaagcacgcgatcaactcccgttaatacacacg
tatttgtggaaactagagactaaacgtctgatcgagcattttgaaagtgccctgaaagaa
gaacaggaggaagatgatgagttgtttctaattgaggatgagcaggaaattcaactccat
gggtacacgggaccagactttgagaacaacttaagggtacccattctggagattctgaaa
tacccttatctactgcttcatgaacggctaagtgagttgtttgttgaggccctcagtaaa
atggagcaagtgaatttctcctttcaggcgtttgaaatgtatcctggcatctatctgctt
ctagtacatccaaatgaaacaatcaggagatgggcaatccttgctgctaaatctcttgga
aaggtggagcgagatgatttctatgacttgcaggaagtgatagcttgtctactaaaggtc
attgaactggatctttttgaaaatacagatttctataacagttatggaatagaagaggga
aaattaattcttttaccaccccatctttatgatgttaccaaccacaagaactactggctt
ggtatctgcatgctgttgatggttttggatgaacaagctatggactcgttactacttgcc
caagataaacagaatgacttcgtgaagtcaattctaaataccatgatgaaaagtaaacca
gatgatgtttctgatccattttggccagctctgcagtgcttcatggtaattctcgatcga
ctaggatcaaaagtttggggccaactcattgaccccacagaggcattccaggctattatt
ggtagccagagttacaacaacgagatagaaaaaattcgtaataccagaaacaacacaaag
gtaaagtacgatactgatgatgacaacatggtttcatgcagccagattgtctatgactac
aactcgaaaagggaaagcaaggatcctggttggaagaatgctatctgcccagattactac
ccgaacatgtatgatgaaatgcaaactctggtgaatgtgctacagtgtgatgttgggcaa
gatatgcgtgtacacaacagtacctttctgtggttcatcccatttgttaactctgtcatg
gacctaaaggatcttggcatagcctacataggagaagttattcaccatatttactcagaa
ataaaggatgttttgaatcggaaggtggcattttgtgacaaagtgactgaatttttcatc
ctcatcttggtatctgttgtagaactccacagaaataaaaacaatcttcatttgctatgg
tacagctcgcagaagtgggtggaagcactggtgaaatgtgccatgcttcctgccagagtg
tttaaccaaaacagtgagaaagctgcaggaacgagtaatgtcaaggtcacatcaaccacg
tttgcagcgatgtcttctgcggcatgttcctgtatcactagctcagtccaacaagcatgt
gttcaactaattcgtagttttctgaaagagggatgtcagtcacagcaaagaaatatgttc
cagcaatttcttgacaaactaaatcgacaattgcgaagcagctttattctaggctggcag
ctaagtccaaaggagcaacaggaattacagtcctgtttgacacaatttattaaaaattca
aaaagtaaaaccgctgaaatgaaacaaatagacacggttggaagaggaagtggactgaag
ggcccactgattaaatgtgaaaaagacccaaaggagtgggggaaaatgcctgcatgttac
aatagtggtcctggtccaccatctccttcaatgttaaaattagactgcaaaggttcagct
attcccaaagctattccaaatcaagaagaaatgactgatcacaagtctctagaaaacaaa
cctaaagaatcctctgaagaagcagttctcccatttaagactgaattcaccttgtatgat
gacattactttccttaataagatcaatactgattcttctaatactcatgaagaagaatta
cctacacacgtgaccaaaatggaaacctctcctccccttcgttcccattctttggacgat
gtgacagtggatttcccacagagtagacaaagacagattcgagaacaagctggtggactt
gcacccacatccacttccaatgtggattttagcgcaagttccctggataaaaataatttg
caggctgaacctcttgaaatcactcatagtgttccacgtaaagaaaaatggaaacggtct
atgctactggagtttcaggaatctatgaacaagaattccacagaacctgaagctgtctct
tctgaaaaagatcagcatgttatttctcatgtcccttcaacttctgatcatgcagaaact
gattgtgatttgcctcaaacactggaatcagtcagtgctggaccaagtaagtttaagatt
gatccaagcaaactcttcaatctgaaggtaaagatgcaagcaatcaatctcaagatgaaa
gaaattaataattcttcgagtaaagaaaggacatttgagaaaatagctgatgcaggagct
gacaataggcaatcagataagatgaataatagaaactcaagtcacgttcctaatgtcagc
aaaaatcaaatcacagatgacgagactactgaaagtttgctctcctctcaagtgcgtaca
gcacaattgtctccaatttctgacaaaagagccaagtcacaaagttctgatgatttattg
ttatctcctctgccggaatctagcagtgcatccaaatcttctggtctgtcaaacccactt
cacgattgtcatagcaatagcagtgatagtgatgatgatattccattcggtttattaaag
cttaaacttaagagaagaatttcttcaacttccaaggtgaatagaaatgattccaaggag
gatgaagactttaagccctcactagctgtctctaccataagtactaatttatccagtgag
cttcccacagagttacacacaatccaatcactgaacaaggttgataggaaagtaaaagct
ttttgtcagggacagttgtgcaattccattcagaataaagaaaattttgaatctgactta
acaatgaataagcccactgaagacaataatgcagaattgataactatctctgattcagaa
acatcaaaagaatttaccagctcattaattgtttctacctcagaagcagagaaaaaagac
aatgccacctctattcagtgtgtctttggcgtaattgaggaaaatcagtcatgtttgcaa
gaaaagtcagtgtgtaacaagtccccccctgtcttcgagaatgattcccagttctttgaa
tttgaaagtgaagaacaggtatattctgtttgggaagattctcagccacagccacataac
aaaaaaaagactcagcttgttgatgagtttcacaggcaatctgaagaagaagaaattaac
agtatgcttaatgaatgggggtatgatacagattatgtatctgatgaattaattgaaaag
gttgctgaggaggcagaagccagtttgaagggagagcagaaacgaaaacggagtagcctg
gacactgaaaagcaattatcgcttagagtttcttctctgagcagctctacagctaaagat
acaccgattgacaaaagcaatgttcaacattctgggtttactgatgatattgtctctaac
cttcaaaatgagaaagaaatctgcagtaaaaccataattagtggtataaatagtctcaga
tctctaattagatctgacaaatacaagtggatgtccaaatctacaaaagaattgccagat
gatcagcaaggaagcaagctaactgtgaaaaatagagcagatggatttaaaaataatctt
gtttcatcaaaagctagagcaggagaaaaacaattatccaaagccacttctagtaaagat
tcaaacaagtccacccttaaaaaacaatctcagtgcaatggcccagaccagaaaactagg
tttaaaaataaaacaagtaaaaattcaaaggaaaaagcatccctggtgtcattaactaat
atttgcaaatcacttgccagggatgtacaaatggaagttccttcaacttcagtgaaacac
cattctagctcacttccaaagaaggtgcgaaagcgtcctgaacctacttcaaccgttgaa
aaacttggcctcaaaaagaaggttcgtaaagcatttgatctttctcagggcagccttgat
accttgaacaaattgcgtacttatggtcaaaaaaaggggactattgagcataaacacaat
aagaaggcaaagctcatttcaccacagaaattaacagtacgcacaaatcaacgattactg
gtttctcaggatcgccagtacctaaggcagtctaagcttcagttaagcaataatgagaag
aaaaggaaatgtacatctactcatgatgaaagtactttcccaaaaaaagctgtgtcaact
gaaggaaattctagctttatttctgcttctgtacaaaggagtcagaagcccaaatccgct
tcagtggaaaccgacaatatttatgttgcggctcctattttgttagaaaagaagcatagt
aaaacaatagacgtggcctcaactcagcaaaaactgtcgagtattaatgcagttgatgac
ttgaatttaacacagcatgatcctttagatatggatgttagtacggatgaaagcttggat
gataatgaattaatgttgacgcagagggatcccatagacatggatatagatgatggcaac
tcggaagaggaggattccagaagagcacctttaagtgcaaatgagaccagatgtcaatac
acaggatgctctgatataattgtatcttcagagaaattttgtaagcaacattctctaaat
gaacccaaagatatctttcctaagccagaattacctccatctatttggaaaagcccaaaa
cctgcaactaccaaactgtttgcttccaactctacttcacgcaatgctcagcttgctaca
gagatgcagtgtgtcccaaaacgtccaggaggagcaacttccaaagttcagcaagttcaa
agaccttcagtagcaaaccttgtgtcacttgcatcgaaaccgactcctattatgaagact
gtggaaactcctaatgttcttcgaactctaaataaagatatgaatttcagagcacagccg
agttttcaaatgtcagctacagcattgccgacgaatgcacctctgccaccttggaaatcc
aggcaggcttcacctaacgtcaacttggatctgacagaacatcgaaaccgtgaccaatct
tatcttatcaatgcagtccttaagtgggattatcagatgtttgactcattaagtcaattt
ggagtacctgattctctctgtgaaattccaccacgcgaggtgcctgaaaagtttcgctca
tatgaagaatattttcaaactttttaccctttactgatgttgaatctttttgagcagtta
gctcagaaactgaaggaatccaagcagacaaatagaatgattcataattctttgactttg
aagaactatcgtgtggcaggaaaaatatactgtgcagaatttcaagtttctctacgtgat
caccagattgaaaaacaactacaccctaaagaggatgatgttgtgttcctgtggttgccc
caaaatcagaattactacatgcaagaagagggcgaaataatgaataataatccagtccca
catataagccatatctcaaagacatcgcgtttttcaactggacgtgattcattgacaact
cttcacctttcaatccaaacgagaggaaatgttagtgcagtgaaaaaccagccagtgagg
tgtgatgtaattggttcccttgtgaccaccttgaggcagttcaaaggattgctttttcta
gccaaaacgcctctgatcaggccaattctttcagcgaattctatatattttattcaaaaa
ggttttgtggaacgtccaaaattggacaatactgatgattacaatgaacatcagcagaaa
gctattcacacggcttatgcgatggtgaaacaatcaagaattcccaatatctgtctcata
cagggacctcctggaacaggaaaatcaaaaacaatcgttggtttcctgcatcgtttgctc
aatgaggaacaagagaatgtgaaaccatctgacagcaggaacttaagatctaaacgaacc
aggattcttgtgtgtgcaccatcaaatgcagctattgatgatctcatgaaaaaaatcatt
gttgattttaagtcaaagtgcaaagataagaataacgcattaggcaactgtggggatgtg
aacctggtaagactaggctgtgagaaagctatccactcagatgtaatgaagttcagtttg
gattaccaagtgaatcataggatcaagaggggtcaatatgatgctgatcagaggcgaaag
gattggttggaccggaagctagatgaactggggaagagatgcgccatcatcaaaaaagac
aaggaacagattgaagtggcaacacgagaaaagagacaattggagaaagagagggaggaa
cttggacgcaaactgaaggagcttcgaggacaaacccaggacatgcaactaaacattatt
ctggaagcacacatcatctgctgcactttgagtacctgtgggattatgcttttggagatg
tcattccgaaaactgggacatgaaccatttagttgtattgttgtggatgaggctgggcag
gcatgcgaaacagaaatactgattcctttgatatatcgctgtcctaaacttgttcttgtt
ggagaccatgaacaattgccaccaaccataatctccatgaaagcaaaggagttgcgctat
ggccgatcaatgatgtgtcggttgcaaaagtccctgcagaatgaagtgaagcagattaat
tctggatggagcccagtaatcatgctattaactcagtacaggatgcatcctgacatctgc
cattttccctccaagtacatctatagaagtttgttgaagaccgatgagaagacagagatg
caacgttgttctctgacctggcctttccagtcatacatgttgtttgatgtgacggatgga
tatgaatgccgggagaatgattcttacaccaacgcacaggaagtgaaactggtaatagct
ttgatcagtatgattgcagagaaacaaaaaggcgtttgtcgtaatattggagtaattacc
ccctataatgcacagaaacagaaaatcctgaatcagattgatcaagagttgagaactgct
ggccttgaacaaggcaggacagtgcaggtgggcacagtggatggatttcaaggctgcgag
aaggactgcatcattgttacctgtgtcagagcaagcaattttcaaggatctattggattc
ttagcagaccggcagagactgaatgttacaattactcgagctcgtctgagtctcttcatt
ctgggaaatctgaaaacactcctggaaaataaagattggaaagctttgattcaggatgca
cagaaaagaggagctatagtgaaaacaagtgaaagtgattataagaaagactgccaaaaa
atattgaaacccaggtctgctgtccagagaagtatttctgatccagatgcattaacgggt
gaacagaaacaagttcctgatcttgcatggaaaagctcatggaatgaaactagtatgcat
tcagcagctgatgtcagcagtgggcaatttccaaaaacactgattccttctcaatcagtt
tcaaaacatcatttgcataatgctcaatcatctgttactgcacaacctgagatatcagtt
aggtcagagctgtctgctcaggataaaccgagggatccaagactggcccgaagagctttg
ctcaaagaaactcagccacaattaaaagtcactcgtactttttctgagtcacgtgtagta
atttcaccagattcctctgcatctggtggtgggcatggggctattcattcttcaaacgtt
agtcagcctcctagaaattctctttgcaggattgatgttgataaaccttatccttctcct
ctgaacagaagtttgacctttccttctggatctagaaatgatcagaatacagtctacaat
gtcagcaattgtgcaggttcctggaagcaacaacaggatgaaaaggcaaaaggagatagg
cctggagaacagaaacagagatacaaatga
DBGET
integrated database retrieval system
