Chiloscyllium plagiosum (whitespotted bambooshark): 122564981
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Entry
122564981 CDS
T08871
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4 isoform X1
KO
K03679
exosome complex component RRP4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122564981 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122564981 (exosc2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122564981 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122564981 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
122564981
NCBI-ProteinID:
XP_043576493
LinkDB
All DBs
Position
30:complement(43932517..43948506)
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AA seq
308 aa
AA seq
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MAVDIRLATARKRVFLPVEVGKHLVSPGDTITTDTGFMRGHGTYMEDDKLIASVAGAVER
VNKLICVKPLQTRYNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRR
RSAEDELMMRDYLQEGDLISAEVQAVFADGALSLHTRSLKYGKETPYPFSFFFNFNLFGQ
LGQGTLVQVSPSLVKRRKTHFHNLPCGAAIILGNNGYIWIYPFTEQKDDEAGGFVTNLEP
VPLSDREVISRLRNCIIALNIHKLLLYDTSILYCYEASMHQQIKDILKPEIMEEIVMETR
QRLIDQEG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggacattcggttagcgacggcgcgaaagcgtgtctttttaccggtggaggtc
ggtaaacatctggtatcaccgggcgacactatcactaccgacaccggtttcatgagaggt
catggtacctacatggaagatgacaaactaattgcatcagttgctggagctgtggaaaga
gtgaacaagttgatatgtgtcaagccacttcaaaccagatataacggggaagttggggat
gtcgttgtgggcagaatcacagaggtgcaacagaaacgatggaaagtggagaccaactcc
agactggattcggtactgcttctatcatctgttaaccttcctggaggtgaattgagaaga
agatctgcagaggatgaactgatgatgagggattatctgcaagaaggagacttgatcagt
gcagaggtacaggctgtgtttgcagatggtgctctgtccttgcacaccaggagtctgaag
tatggcaaggagactccttatccattttctttcttcttcaactttaatctcttcggtcag
ctgggccagggaacgttggtccaggtttccccttcactcgtaaaacgtcgcaagactcac
tttcataacctgccctgtggagctgccatcatccttgggaataatggctacatctggatt
tatccatttactgagcagaaggacgatgaggcaggaggatttgtgactaacctggagcca
gttcctttatcagacagagaggtgatctcacgactccgcaattgcatcattgctctgaat
attcacaagctgttgctgtatgacaccagcattctgtattgctatgaagcttcaatgcat
caacagatcaaagatattctgaagccggaaataatggaagaaatagtgatggagacaaga
caacgtctaattgatcaggaaggatga
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integrated database retrieval system
