Chiloscyllium plagiosum (whitespotted bambooshark): 122565273
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Entry
122565273 CDS
T08871
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122565273 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
122565273 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122565273 (lsm7)
03041 Spliceosome [BR:
cpla03041
]
122565273 (lsm7)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122565273 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
122565273 (lsm7)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122565273 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
122565273
NCBI-ProteinID:
XP_043576992
LinkDB
All DBs
Position
31:complement(17139979..17146726)
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AA seq
104 aa
AA seq
DB search
MMADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYVRDPD
DQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggataaggagaagaaaaagaaggagagcattctcgacctctccaagtacata
gacaaaacaatccgtgtgaaatttcaaggcggacgggaagccagtggaattttaaaagga
tttgatccacttctcaatcttgtattggatggaacaatagagtatgtgagagatccagat
gaccaatacaaattgactgaagacacacgacagcttggcttggttgtatgcagaggaaca
tcagttgttctgatttgcccacaggatgggatggaggctattccaaaccctttcatacaa
caacaagatggttaa
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integrated database retrieval system
