Chiloscyllium plagiosum (whitespotted bambooshark): 122565487
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Entry
122565487 CDS
T08871
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122565487 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
122565487 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122565487 (lsm4)
03041 Spliceosome [BR:
cpla03041
]
122565487 (lsm4)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122565487 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
122565487 (lsm4)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122565487 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
122565487
NCBI-ProteinID:
XP_043577443
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All DBs
Position
31:41793841..41807983
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AA seq
128 aa
AA seq
DB search
MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECYIRGSTIKYLRIPDE
IIDMVKEEVLSKGRGRGIQQQKQQQQQKGRGAGGAAGRGVFGGRGRGVAGVNRGQEKKPG
KLSGLKKP
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtggagctgaagaatggagaaacatacaatggtcatctggtcagctgtgacaac
tggatgaatatcaacctgcgggaggtcatttgtacatccagggacggggataagttctgg
aagatgccggaatgttacattcgtggcagcaccatcaagtatctccgcatcccagatgaa
atcatcgacatggtgaaagaggaggtactgtcgaagggccgaggacgtggcattcagcaa
cagaagcaacagcaacaacagaaaggccggggtgcaggtggcgcagctggcagaggtgtg
tttggtgggcgtggacgtggagtggccggagtaaacagaggacaagagaagaaaccagga
aagttatcaggactgaaaaaaccatga
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