Chiloscyllium plagiosum (whitespotted bambooshark): 122565516
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Entry
122565516 CDS
T08871
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122565516 (upf1)
03015 mRNA surveillance pathway
122565516 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122565516 (upf1)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122565516 (upf1)
5.6.2.5 RNA 5'-3' helicase
122565516 (upf1)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122565516 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122565516 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122565516
NCBI-ProteinID:
XP_043577495
LinkDB
All DBs
Position
31:complement(43733813..43801853)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPIEGQVNG
PDGVLQNGAIDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKVGRGARQRNRGMGNQLNSQSN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggccgagctcacagaccctcaccttcctggacacggaggag
gccgagctgctgggggccgatacgcagggctccgagttcgagttcaccgacttcacttta
ccgtcacagacacaaacacagggccagagccaagggcccatcgaaggccaggtgaatgga
ccagatggggttctccagaatggagcaattgatgatgctgttgccaaagcaagtcagtta
ttaccagaactgaactttgaagaggatgaagaagatacgtactacacaaaggatcttcct
ttgcatgcctgcagttattgcggaattcatgatccagcctgtgttgtttactgcaacacc
agcaagaagtggttctgtaatggccgtggaaacacctctggcagccatattgtaaatcat
ctggtgagagccaagtgcaaggaagtgactcttcacaaagatgggccattgggagagact
gtcctggagtgttacaattgcggttgcaggaacgtgttcctcctgggtttcatccctgct
aaggctgactctgtggtggtgctcctatgcagacagccatgtgccagtcagagcagcctg
aaagatatcaactgggatagttcacagtggcaaccactaatccaggatcgttgctttctg
tcttggttggtaaagataccttcagagcaggaacaattgcgagcccgtcagatcactgca
cagcagatcaacaaattggaggagctctggaaggataatccttctgctacccttgaagac
ttggagaagcctggagtggatgaagagcctcagcatgtactgcttcgttacgaggatgct
tatcaataccagaacatcttcggtccactggtcaagctggaggctgactatgacaaaaag
ctaaaggaatcgcagactcaggacaatatcactgtaagatgggatctgggtctgaacaag
aaaaggattgcatacttcaccttgcctaagacggactctgacatgcgcctgatgcagggt
gatgaaatctgtctgcgctacaagggtgacctggctcctctttggaaagggatcggccac
gtgatcaaagtcccggacagtatcctttattatggggatgagatcgctattgaattgcgc
agcagtgttggagctccagttgaagtaacccacaacttccaggtggattttgtctggaaa
tcaacttcatttgacagaatgcagagtgcattaaaaaccttcgcagtggatgagacctct
gtgtctggctacatttaccacaaattgcttggccatgaggtggaggatgtgattattaaa
tgccagctgcccaaacgcttcactgcccatggtttgcctgaccttaatcattctcaggtt
tatgctgtgaagactgttctgcagcgtcccctcagtctaatccaaggaccaccaggcact
gggaaaactgtcacctctgctacgatagtttatcatctggccaggcaaggcaatggccct
gtcctggtatgcgctccgagtaacattgcagtggaccagttgactgagaagattcatcat
acaggtctgaaggtggtgcgtctctgtgccaagagtcgtgaggctattgattcaccagtc
tctttcctggctctgcataatcaaatccgtaacatggatagtatgcctgaattgcaaaaa
ttgcagcagttaaaggatgagactggcgagttgtcatctgcagatgagaagcgctaccgt
gcactcaaaaggacagctgagcgggaactgctgatgaatgcagatgttatttgctgtact
tgcgtcggagctggtgacccacgcctggctaagatgcagttccgttccattctcattgac
gagagcacacaggccacagagcctgaatgtatggtccctgtagtgctgggagcaaagcag
ctgatcctggtgggtgaccattgccagcttggtccagtggttatgtgtaagaaagctgct
aaagctggtctgtctcagtcgctttttgagcgtctggttgttctggggatccgaccaatt
cgtctgcaggttcaataccggatgcatccagctctcagtgcctttccatccaatatcttc
tatgagggctcactgcaaaatggtgtcacagcagcggatcgcattaagaaaggctttgac
ttccagtggccacagccagacaagccaatgttcttctatgtaacccagggccaggaggaa
attgctagctcggggacctcctacctcaatagaactgaggcagccaatgtagagaagatc
accaccaaactgctgaaggcaggtgccaagccagatcaaatcggcatcatcacaccatat
gaggggcagcgatcctacctggtgcagtacatgcagttcagtggttcccttcacaccaaa
ctctatcaggaggtagaaattgccagtgttgatgcgttccaaggccgagagaaggacttc
atcatcctatcgtgtgtccgagccaatgagcatcaaggcattggatttctcaatgatccc
cggcgattgaatgtggccctcacaagagcgagatatggtgtgattattgtgggaaatcca
aaggctttatccaaacagccactgtggaatcacctgctgaattattacaaagaacagaaa
gtgctggtggagggaccactgaataatctccgcgagagtctaatgcagttcagcaaacca
cggaaacttgtcaacaccatcaatccgggagcccggttcatgacgacagctatgtatgat
gctcgagaagctattatcccaggctctgtatatgacaggagtgggcaggccggtcgtcca
tccaacatgtactttcaaacccatgaccagattgggatgattggagccagccccagtcat
gttgctgcaatgaatattcccattccctttaatctgatgatgcccccaatgccgcctcct
gggtactttggacaagcaaatggaccagcagcaggtcgtggaattgcaaaaggaaaagtg
ggccgtggggctcgccaacgaaaccgtggcatggggaaccagctgaacagccagtcaaat
ctgccaaacagccaagccagtcaggatgtggtgtctcagccattctctcaagggcctctg
acccagggctacatctcaatgagccagccttcacaaatgagccagcctggcctttctcag
ccagaactctctcaggatagttacctgggcgatgagttcaagtcgcagattgacgtggcc
ttgtcgcaggattccacttaccagggtgaacgtgcatatcaacatggggtgactgggctg
tcacagtactag
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integrated database retrieval system
