Chlamydia pecorum E58: G5S_0142
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Entry
G5S_0142 CDS
T01466
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpm
Chlamydia pecorum E58
Pathway
cpm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5S_0142 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpm03400
]
G5S_0142 (mfd)
Enzymes [BR:
cpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5S_0142 (mfd)
DNA repair and recombination proteins [BR:
cpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5S_0142 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
DUF3638
AAA_19
ERCC3_RAD25_C
RecG_dom3_C
ADDB_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEB41168
UniProt:
A0AA34WHL4
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All DBs
Position
145450..148662
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AA seq
1070 aa
AA seq
DB search
MYQHTAPLLIENVRPGALAFLAAKMFHDTAQPIIMITTPARLDDLFENLSTFLPTLPVEF
PSSEIDLSPKLVNIDAVGKRDYLLYTIHKNTAPLVCVTTLKALLEKTLSPKESAKRHLEL
HVGDTLDPETTVELCKDLGYTQVTVAREKGEFAHRGGIVDIFPLSATEPFRIEFWGEKIL
SLRAYNPSDQLSIEKVSQILISPVEKISSSGTLSHTLLDFFSTPPLCLFDDLETLENDFA
EISGTLASFPERFLSLEGFFQRISNNKSMFFSEAYFPNVQIKKNDAVTIQVFNHALDVQR
VSLPLLYPNEILEHNENPLLSFLQRLQELLPEQNASLKLALYSTKTKSLKEARTLAQQFH
KTHVSIYENSGNLSSSFALVQEGFVAISLSEFASTKILRRQKQRNYFSVTTAEEVYVPVP
GETVVHLHNGIGKFVGVEKKPNHLNIETDYLVIEYADHAKLYVPSDQAYLISRYVGASDT
PPEFHNLNGSKWKRSRELTEKSLVAYAEKLLQLEAQRSTTPAFVHPPHGEEVIKFAETFP
YEETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVP
TTILAHQHYETFKQRMAGLPINIAVISRFSQTKEQKVIFQKVAEGGIDILIGTHKLINKH
LEFHHPGLLIIDEEQRFGVKIKESLKERYPNIDCLTVSATPIPRTLYMSLTGARDLSIIT
MPPLDRLPVSTFLMEHNDETLSAALRHELLRGGQAYVIHNRIESLFRLAENIRTLIPEAR
IGVAHGQMTSEELAKIFHKFKTQQTNILIATAIIENGIDIPNANTILIDHADKFGMADLY
QMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGGGMKIALHDLEIRGAGNI
LGTDQSGHISAIGFNLYCKLLKKTIAALKTHSSPSLLQDTIKIEFPYNSRIPDSYIDSAS
LRIEFYQKVGNAENIEALEAIKQELLDRFGPLPQEVSWLLALAQVRLFALQHNISSIKGT
RNSLSIQQTHGKNELIKQTLPYALSPTPELLIKEVCESIEKAFPLNTFKQ
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
ttgtatcaacataccgccccccttctgattgaaaatgtacgtccaggggcattagcgttt
ttggcagcaaagatgtttcatgatacagcgcaacctattatcatgattaccacccctgcg
cgccttgatgatctgtttgaaaacctctcgacgtttttgcctactctccctgttgagttt
ccttcatcagagatagatctttctcctaagttggtaaatattgatgctgtagggaaacgt
gattatcttctctatacgattcataaaaacactgcgcctctagtatgtgtgactacttta
aaagctcttcttgagaagactctctcccccaaggaaagcgcaaagcgacatttggagctt
catgttggtgataccttagatcctgaaactacagtagagctgtgtaaagatctcggctat
acacaggtaacagtagcaagagaaaaaggggagtttgctcatcgtggggggatcgtagat
atctttcccttatctgcaacggagccttttcgtatagaattctggggagagaaaattctc
tccttacgagcctataatccctcggatcaattatccatagagaaggtttctcagatcttg
atctctcccgtagagaaaatctcctcttcagggacgctctcccatacacttttggacttt
ttttctacaccaccgttatgcctttttgatgatctggaaactctagagaacgactttgct
gaaatctccggaacgttagcgtctttccctgagcgctttctttcccttgaggggtttttt
caaaggatctctaacaacaagtctatgtttttctctgaggcatatttccctaatgtgcaa
atcaaaaaaaacgatgctgtaacaatccaagtatttaaccatgctcttgatgttcaaaga
gtttctcttcccttgctctatcctaacgaaatcttagaacacaatgaaaaccccctacta
agcttcctacagcgtcttcaagagctcctcccggagcaaaacgcttctctgaaacttgct
ctctacagcacaaagacaaagtccttaaaggaagctcgcaccttagctcaacaatttcac
aaaacacacgtatctatttatgaaaactcggggaatctctcgtcgagtttcgccctagtt
caggaaggctttgtagcaatttccctatcggaatttgcctcaacaaaaatcttaaggcgt
caaaaacaacgaaattacttttcagtaacgacagcggaagaggtctatgttccagttcct
ggggaaacagttgtgcatcttcataatgggattgggaagtttgtcggggtggagaaaaaa
cctaaccatctcaacatcgaaacagattacctcgtaatagaatacgcagaccatgccaag
ctctatgtcccttcagaccaggcctaccttatctctcgctatgtaggggcttctgacacc
cctccagagtttcataatcttaatggttccaagtggaaacgttctcgagaacttacggaa
aaatctttagttgcctatgcggaaaagcttcttcagcttgaagcacagcgcagcacaact
ccggcatttgtacatcctccacatggggaagaagttatcaagtttgcagagacctttccc
tatgaggaaactcctgatcagctcaaagctatagagcagatctatgaagatatgatgtct
gaaaagcttatggacagactcatttgtggagatgcagggtttgggaaaactgaggttatc
atgagagctgcagtaaaagctgtttgtgatggccaccgtcaagtgattgttatggttccc
acgacaattttagcacaccagcattatgaaacctttaagcaaaggatggcagggctccca
ataaacattgcagtaatttcaaggttttcacaaaccaaagagcagaaagtcatcttccaa
aaagttgctgaagggggaatcgatattttaattggaacccacaagcttattaataaacac
ctagaatttcatcatcctgggttgctcatcatcgatgaggaacagcgctttggagtaaaa
attaaagagagtctaaaagagcggtatccaaatatcgactgcttaacagtctctgctacc
cctatccctaggacgctatacatgtccctaactggtgctagagatctttctatcatcacc
atgcccccgttggatcgtcttcctgtaagcactttccttatggaacataatgacgaaact
ctatctgctgcattacgccatgagctccttcgcggggggcaagcctatgtgattcataat
cggatagaaagtctatttcgcttagcggagaacatccgtacacttattcctgaagccaga
attggagtcgctcatggacagatgacctcggaagagctagctaagatttttcacaaattt
aagacccaacagaccaatattttgatcgccacggcaatcatagaaaatggtattgacatt
cctaatgccaatactatcttgatcgaccatgcagataaatttggcatggcagatttatat
caaatgaaaggccgcgtaggccgctggaataaaaaggcatattgttattttcttgtccct
catctagatcggctgtctggtcctgctgcaaagcgcttagcagcactcaacaagcaagaa
tatggcgggggaatgaaaattgccctccatgatctagagatccgtggagctggaaatatc
ttaggaacagatcaatctgggcatatcagcgctataggctttaacttatactgcaagctg
ctaaagaaaacgatcgcagcattaaaaacacattccagcccttctcttcttcaagatacg
ataaaaattgaattcccctataactctcgcattcctgattcctatatagattcagcatcc
ttacgaatcgagttctatcaaaaagtaggaaatgcagaaaatatagaagctttagaagcc
ataaaacaagaacttcttgatcgctttgggcctctacctcaagaggtctcctggctacta
gcccttgcacaggtgcggctctttgcgctacaacacaacatctccagcattaagggaaca
agaaactctttatctatacagcaaacccatggaaagaatgagctcataaaacaaactctc
ccttatgcgctttctcctaccccagaactattaataaaagaagtctgtgaatctatagaa
aaagcttttcctttaaacacatttaaacaataa
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