Chlamydia pecorum E58: G5S_1065
Help
Entry
G5S_1065 CDS
T01466
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpm
Chlamydia pecorum E58
Pathway
cpm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S_1065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpm03021
]
G5S_1065 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpm03400
]
G5S_1065 (rpoC)
Enzymes [BR:
cpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S_1065 (rpoC)
Transcription machinery [BR:
cpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S_1065 (rpoC)
DNA repair and recombination proteins [BR:
cpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S_1065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
Mei5
Motif
Other DBs
NCBI-ProteinID:
AEB41981
UniProt:
A0AA34RE04
LinkDB
All DBs
Position
complement(1057269..1061450)
Genome browser
AA seq
1393 aa
AA seq
DB search
MFGENSRDISALVKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGKTDLTKKQLLNDVQYREVVERWGKDAFV
AKMGGEAVYDLLKSEDLQSLLKELKERLRKTKSQQARMKLAKRLKIIEGFVSSSNNAEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDLGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVAIPSKDMTLGLYYLMADPTYFPEDHGEKTKVFKDVTEV
LRALNNGGFLDETLENRRDETGRGIHIHEKIKVRIDGQIIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFAQATKAAISMGLKDVRIPEVKEE
VLKDAYSKVAIVRKQYEDGIITDGERHSKTISIWTEVSEQLSNALYVEISKQVHSKHNPL
FLMIDSGARGNRSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSAVRQGSEELLPLKDRIYGR
TLAEDIYQPGDKSKLLAQNGDVLTSAQAEAIDDFGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPELVASYDGVLVYTD
LRFVKGQDGNNLVLNKMGAVHIVRDEGRSLEEYKKLLSTKSIESLETFPVELGVKILVED
GESVSRGQKIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVTNKNTGLVELIVKQHRGE
LHPQIAIYSDQDFSELVGTYAIPSGAIISVEEGQQVDAGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGIVDFKGIQKNKRILVVRDESTGMEEEHLIPLTKHMIVQ
RGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQ
MLQKIRITDPGDTTFLFGEDVNKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFETHKRIKHYLEKEQED
LVFDFVSESECTC
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgttcggagaaaattctcgagacatttcagccttagttaaggaagggctgtttgataaa
ttagaaataggtattgcttcagatattacaattcgagataagtggtcatgtggagagatt
aaaaagcccgaaacaataaactaccgtacatttaagcctgaaaagggtggtttgttctgt
gagaaaattttcggtcctacgaaggattgggaatgctgttgtgggaagtataagaagatt
aaacacaagggaattgtttgcgatcgctgtggtgtagaggttactctatctaaggttcgt
cgtgagcgtatggcgcatatcgaattagctgtgcccattgtgcatatttggtttttcaaa
accaccccctctagaattggtaatgttttgggaatgacagcttctgatctagagcgtgta
atctactacgaagaatatgtagttattgatccgggcaagacagatttgacaaaaaaacag
cttttaaatgatgtgcaatatcgtgaagttgttgagcgttggggtaaagatgcttttgtc
gccaaaatggggggagaagcagtttatgatcttttaaaatcagaagatctccagagttta
ctcaaagagctgaaggagcgtttacgtaaaactaaatcacagcaagcacgaatgaagctt
gcaaaacgtttgaagattattgaaggatttgtttcttcttctaataacgctgagtggatg
gttttaaaaaatattcctgtagttccacctgatcttcgtcctttagttcctttagatggg
ggacggtttgctacctcagatttaaatgatttgtatcgtcgtgtgattaatcgtaataat
cgtttaaaagcgattttacgtttaaaaactccagaagttatcgtgagaaatgaaaagcgt
atgctgcaagaagctgtagatgcgctgtttgataacggacgtcatgggcaccctgtaatg
ggagctggaaatcgtcctttaaaatctctttcagaaatgttgaaaggaaagaatgggcgt
tttcgtcaaaatcttttaggaaagcgtgtagactattccggacgttctgtaattattgtt
ggcccagagttaaagttcaaccaatgtggtcttcctaaggaaatggctttagagttattt
gagccatttattattaaacgactgaaagacttgggaagtgtgtatactattcgctctgcg
aagaaaatgattcaacgtggggctcctgaagtgtgggatgttttagaggagatcattaaa
gggcatcccgtacttttaaaccgagcgccgacacttcaccgtttgggaatccaagcattt
gagcctgtattgatcgaaggtaaagcaatccgagttcatcctttggtttgtgctgctttt
aacgcagactttgatggagaccagatggctgttcacgtgcctttatctatagaggcacag
ctagaggctaaagttttaatgatggctccagataatatttttcttccttcttctggaaag
cctgtagcgattccttctaaggacatgactttagggttgtattaccttatggcagatcct
acgtatttccctgaggatcacggtgagaaaacgaaggtctttaaagatgtaacagaggtt
ctaagagcgctaaataacggtggatttttagacgaaactttagaaaatcgtcgtgatgaa
acaggacgagggattcatatccatgaaaagataaaagtccgtattgatggccagattatt
gaaaccaccccaggaagggtgttgtttaataggatcgttcctaaagagttaggattccaa
aattatagtatgccaagcaaacggatcagtgagctgattttgcagtgttataaaaaagtt
ggtcttgaagctacggtgcgtttcctagatgacttgaaggatcttggctttgctcaagca
acaaaagctgcgatttctatgggattgaaagatgttagaatcccagaagttaaagaagaa
gtgctcaaggatgcatatagtaaggttgctattgttagaaagcagtatgaagatgggatt
attacagatggagagcgtcattctaaaacgattagtatttggactgaggtttcagaacag
ctttctaacgcgctttacgtagaaatcagtaagcaagttcatagtaagcataatcctttg
ttcttaatgattgactctggagctagaggaaaccgttctcagctgaagcagttgggggca
ttacggggattgatggcgaagccgaacggagcaattattgaatctccgattacttcgaat
ttccgagaaggattgactgttttagagtattcgatttcatctcacggagcgcgtaaaggt
ttagccgatacagcgttgaaaactgcggattctgggtatctaacgcgaaggcttgttgat
gttgctcaggatgttatcattacggaaagagactgcggaacattgaaccatattgaggta
tctgctgttcgtcagggatctgaagagcttttgcctttgaaagaccgtatttatggccgt
actctggctgaagacatctatcaaccaggagataaaagtaagctattggctcaaaatggc
gatgtgctaacttctgcacaggctgaggctattgacgactttggaattgaatcgataaaa
attcgctctacattaacttgtgaaagtcgtcgtggtgtatgtgcgaaatgttatggcttg
aatctggctaatggtagacttattggcttaggagaggctgtaggaattattgctgcacaa
tctattggggagcctggaacgcagttaacaatgagaacgtttcaccttggaggtattgct
gcaacatcttcaactcctgagctcgttgctagctatgatggggtattggtttatactgac
ctaagatttgttaaaggacaggatggaaataatttagtcctgaataagatgggggcagtg
catattgtccgcgatgagggccgtagtcttgaagaatacaagaaacttttaagtacaaaa
tctatagaaagtttggaaactttccctgtagagcttggagtaaagattcttgtagaggat
ggagagagtgtatctcgagggcagaagatagcagaggttgagttacataacattcctatt
atctgcgataagccaggatttgtaaaatatgaagacttggttgaaggaatttctacagag
aaggtaacaaataaaaatactgggcttgtagaattgattgtgaagcagcatcgaggggag
ctacaccctcaaattgctatttatagtgatcaagatttttcagaacttgtaggaacttat
gctatcccttctggagctattatttctgtagaagaaggccagcaagttgatgctggaatg
cttttggctagactccctcgtggcgcgattaagacaaaagacattactggtggtttgcct
agagttgcagaattggtcgaagctcgtaaacctgaagatgctgcagacattgcaaaaatc
gatgggattgttgactttaagggaatccagaaaaataaacgtattcttgtagttcgggac
gagagtacaggcatggaagaagaacacttgattccgctaacaaagcacatgatagttcag
cgtggcgatagtgtgattaaaggacagcaacttactgatggcttagtagttcctcatgag
attctggaaatttgcggtgttcgcgagttgcaaaaatatctcgtgaatgaggttcaagag
gtatatcgtctgcagggtgtggatattaacgataagcacatagaaattatcgtgcgacaa
atgctacaaaagatccgtattaccgatccaggtgatacaacattcctttttggcgaagat
gttaataaaaaagagttttacgaagagaaccgccgtacagaagaagatggaggcaagcca
gcgcaggcagttcctgtgttgttaggaattactaaggcttcattaggaacagaatccttt
atttccgctgcctcattccaagatactacacgtgtattgacggatgccgcatgcagtagt
aagacagactatttattaggcttcaaggaaaatgtaattatggggcacatgattcctgga
ggtacgggatttgaaactcataagcgaataaaacactacttagagaaagaacaagaggat
ctcgtttttgattttgtcagcgaatctgaatgtacttgttag
DBGET
integrated database retrieval system
