Coprothermobacter proteolyticus: COPRO5265_0630
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Entry
COPRO5265_0630 CDS
T00773
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpo
Coprothermobacter proteolyticus
Brite
KEGG Orthology (KO) [BR:
cpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpo03016
]
COPRO5265_0630
Enzymes [BR:
cpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
COPRO5265_0630
Transfer RNA biogenesis [BR:
cpo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
COPRO5265_0630
Prokaryotic type
tRNA splicing ligases
COPRO5265_0630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACI17780
UniProt:
B5Y888
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All DBs
Position
578043..579476
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AA seq
477 aa
AA seq
DB search
MWKQVDKFVYEIPLGAKEGMRVPGRVFASETIFKQAEADKALEQVVNVATLPGILRYSLA
MPDIHWGYGFPIGGVAAFDVDHGVITPGGIGFDINCGVRLLVTPLTEEQVRPKLGALLDV
LYKEVPSGVGSEGFIKLSVRELDKVLEMGAKWAVEQGYGTFEDLERLESQGQLKGADASK
VSKRAKERGLEQLGTLGSGNHFLEVQKVDEIFDEAVAKQMGLSLGQVTIMLHTGSRGLGH
QVATDYIDVMLKASKKYGIKLVDKQLAAAPFKSEEGQDYWAAMQCAANFAWANRQVITDY
IRKAFAKVFGNEIKDKITVIYDVAHNIAKLEKHMVDGMEREVVVHRKGATRSFPAHHPEL
PSIYENTGQPVIIPGSMGSSSFLLVGLPGSMEQSWGSTCHGAGRVMSRKEAIRKGNYGTL
MDSLGEKGILVRSAERETLLEEAPEAYKDVDEVVHVVEELGLNRKVARMRPMGVVKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagcaagtagataagttcgtgtacgagattcctttgggggcaaaggaaggtatg
cgagtaccggggcgtgtttttgcttccgaaaccatattcaaacaagccgaggcagataag
gcgttggagcaggtagtgaacgtagccactctgcctggtatacttagatactctcttgcc
atgcctgatattcactggggttatggtttccccattggaggtgtggcggcttttgatgta
gatcatggtgtgattactcctggaggtattggttttgacataaactgcggtgtcagactg
ctagttacaccactaacagaggagcaagttcgacctaaactgggcgcgctcctggatgtt
ctgtacaaagaagtccccagtggggtagggtctgaaggcttcataaaactttcggtaaga
gaactggataaggtcttggaaatgggtgcaaaatgggcagtagaacagggatatggaacg
tttgaggatttggagaggctcgagtcgcaagggcagttaaagggcgccgatgcgagcaag
gtgtccaagagagctaaagaacgtggtctggaacagttgggaacattgggttcaggaaat
cacttcttggaagttcagaaggtagatgagatcttcgatgaagctgttgctaagcaaatg
gggctttctttgggccaggtgaccataatgcttcacacgggttctcgaggattaggacac
caagtagccacagattacatcgatgtcatgctcaaagcttcaaagaagtacggcattaaa
cttgttgataagcagctggctgcggctccctttaagagtgaagaaggtcaggattactgg
gcagcgatgcagtgcgcagcgaattttgcttgggctaaccgccaagtgattactgactac
ataagaaaagcctttgctaaggtatttggcaacgaaataaaagacaagattactgtcatt
tacgatgtggctcataacattgcaaagttggaaaaacacatggttgatggcatggaaaga
gaagtagtagttcacagaaagggagcaactcggtcgttccctgcgcatcacccggagttg
ccttccatttatgaaaacactggtcaacctgtgattatccctggtagtatgggttcaagc
tccttcttgctcgttggactgccaggcagcatggaacaatcatggggttccacgtgccat
ggagcgggcagagttatgagtaggaaagaagccataaggaaaggcaattatggaacgctt
atggacagtttgggtgaaaaaggcatattggtaaggagcgcagaacgggaaacactctta
gaagaagctcctgaagcctataaagacgtagatgaagtggtgcatgtggtagaagaattg
ggcttaaacaggaaagtagcaaggatgagacctatgggggttgttaaaggttga
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