Cavia porcellus (domestic guinea pig): 100135517
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Entry
100135517 CDS
T07777
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100135517 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100135517 (Ddx6)
03036 Chromosome and associated proteins [BR:
cpoc03036
]
100135517 (Ddx6)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100135517 (Ddx6)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100135517 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
100135517 (Ddx6)
Chromosome and associated proteins [BR:
cpoc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100135517 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
100135517
NCBI-ProteinID:
NP_001166415
Ensembl:
ENSCPOG00000010587
UniProt:
Q9WTM2
LinkDB
All DBs
AA seq
472 aa
AA seq
DB search
MGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQSMTTTIKPGDD
WKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL
TGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHM
GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL
LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQ
YYAYVTERQKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQE
HRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL
GLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgtccagtcaaaatggtcagctgaggggccctgtgaagcccagtggtggcccc
ggaggagggggcacacagacacagcaacagatgaaccagttgaaaaataccaacacaatc
aataatggcactcagcagcaagcacagagtatgaccaccactataaagcctggtgatgac
tggaaaaagactttaaaactccctccaaaggatctgagaatcaaaacctcggatgtgacc
tccacaaaaggaaatgagtttgaagattactgtttaaaacgggagttattgatgggaatt
tttgaaatgggctgggaaaaaccgtctcctattcaggaggagagcattcccattgcttta
actggtagggatatcttagctagagcaaaaaatggaacaggcaagagcggtgcctacctc
attcccttacttgaacggctagacctgaagaaggacaatatacaagcaatggtgattgtt
cccacgagagaacttgctctacaggtcagtcaaatttgcatccaggtcagcaagcacatg
ggaggggccaaagtgatggcaaccacaggaggaaccaatttacgggatgacataatgagg
cttgatgatacagtgcatgtggtaattgctacccctggcagaatcctggatcttatcaag
aaaggagtagcaaaggttgatcatgtccagatgatagtattggatgaggcagataagttg
ctatcacaggatttcgtgcagataatggaggatattattctcacattacctaaaaacagg
cagattttattatattctgctactttccctcttagtgtgcaaaagtttatgaattcccat
ttgcagaaaccctatgagattaacttgatggaggaactaacgttgaagggagtaacccag
tactacgcatatgtaactgagcgccagaaagtacactgcctcaacacacttttccccagg
cttcagacaaaccagtcgatcattttctgtaactcctcccagcgagttgaattgctagcc
aagaagatttctcaactgggttattcttgcttctatattcacgctaaaatgaggcaggag
catcgaaatcgtgtgtttcatgatttccgaaatggcttatgccgcaatcttgtttgcact
gatctgtttacgcgaggtattgatatacaagctgtgaatgtggtaataaactttgacttc
ccaaagctggcagagacctatcttcatcgtattggaagatcaggtcgctttggtcatctt
ggcttagccatcaacttgatcacatatgatgatcgcttcaacctgaaaagtattgaggag
caactgggaacagaaattaagcctatcccaagcaacattgacaagagcctatatgtggca
gagtaccacagtgagcctgtagaagatgaaaaaccataa
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