Cavia porcellus (domestic guinea pig): 100714311
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Entry
100714311 CDS
T07777
Symbol
Vps13a
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoc04131
]
100714311 (Vps13a)
Membrane trafficking [BR:
cpoc04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100714311 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
100714311
NCBI-ProteinID:
XP_013010478
Ensembl:
ENSCPOG00000006841
LinkDB
All DBs
Position
Unknown
AA seq
3067 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDTSQLSLGIWSGAVALRNLEIKENALSQLDVPFKVKVG
HIGTLNLVIPWKNLYTQPVVAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEE
TKQKVDQEQHQNEKQDTFAEKLVTQIIKNLQVKISNIHIRYEDDITNRNKPLSFGVSLQN
LSMQTTDQNWVPSLHDETEMRLFRKLIRLDNLFAYWNVKSPMFYLYDYDESLDSLRNGIV
NKKNVLRGYDFVFRPISANAKLQMNRRSDFDFSDPKINLEVELHKIAIEFNKPQYFSVVE
LLESVDMMKQNLPYRKFKPDVPLHHHAKEWWNYAIRGVLEVNVGPKLRMWSWKHINAHRQ
KMKQYKELYKKKLTSKKPSGEILMSLEELEKTLDVFNITIVRQQAEVEVKKAGHRIYREG
VKDPEDNKGWFSWLWTRSESKTKQTRKQPDVKPGILEEMLTPEEKVLLYEAIGYSETAVD
PTLPKTFEAMRIFIHLKSMSVVLRESHQKPELIDIVVEEFSSSIVQRPGAQAIKFETKID
SFHVTGLPDNLRKPHLLTSLDNVSLFRIVFEINPLDETVAQRCIVEAEPLEIIYDARTVN
SIVEFFRPPKEVHLAQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLRINLKASYIIVP
QNGIFSPTSNLLLLDLGHLMVTSKSRLELPDVKQGGPNLEAIRDRAYDSFDVQLTSIQLL
YSRVGENWKEARKLNISTQHILVPMHVNVELSKAMVFMDIKMPKFKITGKLPLVSIQVTD
KKLQEIMELVESIPKPEPVTDVPAPVKSFQTQTSISLGASQKIIPFLDLSCATEDESEEE
FFDAPSSPLEAPCEFLAGVKSVHQRKLQKQEYRVNLTQFKIRFEVEEVLIQLYHPXGRLX
TACCXEIXCFRCQAWKFEIRTFDLKLDENKKPVYLVTTLDNTVEDLLTLEYVKAEKNAPN
LKSTYGSVLQLIKVNFSSLDIHLHTEALLNTINYFNKILPPSMGTSASVSTVETEDKGEI
IKKLAFKQSMNEDIITLQIFAELSCLQIFIQEQKRNISEIKIEGLDSEVIMRPSVTEINA
KLRNIIVLDSDTMAVYKKAVYITEKEVFSFRMISYMDATAGSAYTDMSVVDLQINLTVGC
IEVVFLTKFLYSILAFIDNFQAAKEALAEATVQAAEMAATGVKELAQRSLRLALDVKINA
PVVIIPQSPDSTNIFVADFGLITMTNKFIMVTESQSNPPPVIDLITIKLSEMRLYRSQFI
NEEYQEVLDLLLPLNLEVVVERNLSWDWYQEVPCFNVNAQLKPMEFILSQEDLTTIFKTL
YGNLWYEPGVSASPAITKDQSSGASVVTNASPQSAGATVVTAAVVEVYSRGSQVKTMLNI
SFKTDYLTMMLYSPGPKLTSFSDVRDPSLQLAEFKLENIISSLKMYTDDNTVSSFSLKNC
ILDDKRPHVKKATPRMIGLTVGFDKKDMMDVQYRTVRDGSVTDAVFQEMYICASVEFLLT
VANVFLEAYTTGTTVENTVQTWAAKEVPMQESEKWEVNILIKNPEIVFVADMTSSDAPAL
VITTQCEICYKGDLENSTVTAAVKDLQVRACPFLPVKRRGRVATVLQPCDLFYQATQTGV
DPQVMDISVKSLTLKVSPVIINTMITITSALYTTKEMIPEVTVSSIARLWEKKDTKDLKM
WFLEESSETEKITPTTELVPKGEMMKMNIDSIFIVLEAGIGHRTVPMLLAKSRFSGEGKN
WSTLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWTLGIKMKKKPKKAIVES
DTEAENYKVPEYKTVISFNSKDQLNVTLSKCGLVMLNNLVKAFTEAATEPSALFVRDLAP
FIILNSLGLTVSVSPSDAFNVLNVPLAKSYTLKNEESLNMDYVGTKDNDHFSAMTSLSSK
LFFILLTPENHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQIDAVEGSKAVIIRSPVQ
IRNHFPVPISVYEGEKLLGIALPENEFNIPLASYRNLITKGIENTVFTLNEGQSTHIYAV
QMDKARFHLKLLNYLNHDWKGEYQIRANQQDISFITFTCVTEMEKTDLNIAIHMTYNTGQ
TVVAFHSPYWMVNKTGRMLQYKADGIHRKHPPNYKKPVIFSFQPSHFFNNNKVQLMVTDS
ELSDQFSIDTVGSHGAIKCKGPQLDYQVGVTINLSSFNITRIVTFTPFYMIKNKSKYHIS
VAEEGLNKWLSLDLEQCIPFWPKDASSKLLIQVENSEGPPKRIYFNKQENGVLLHLNDEL
GGIIAEVHLAEHSTVITFSDYHEGAAPFLLINHTRNDLIQYKQSSLSEVEDSLPPGKAVF
YTWADPVGSRKLKWSCGESFGEVTQTDDMMSAINVGKKTIYLVSFFEGLQRIILFTEDAK
VFKATYESEKMELAEQEIILALQDVGISLVNNYTKQEVAYIGITSSDIVWETKHKKKARW
KPMSVKHTEKLEKEFKEYIESSPLEDKIIELDTIQVRLTPSGNNMKILQPHVIGLRRNYL
PALKVEHSTSAHQSSFRVQVYRIQIQNQIHGAIFPFVFYPVRPPKSVTMDSAPKPFTDVS
IVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFIYALADLMAGNEVTEKTEEGLFNKDIEA
FEEDYETGSLIDQSQVSLYEYFHISPIKLHLSVSLSPGREEVKDPEQRGGLIPFRSINLL
LKSIGATLTDVQDVVFKLAFFELDYQFHTTSQLQSEVIKHYSKQAIKQMYVLILGLDVLG
NPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGA
MAKGVAAITMDEDYQQQRREAMNRQPTGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGV
IRPYRLRDGTGNQMLQVMENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTC
EWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAREFGKIINFKTPEDARWILSKLEAA
REPSPSL
NT seq
9204 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtcgtggacgtgctgaaccgcttcttgggggactacgtggtg
aacctggacacctcccagctgtccctgggcatctggtcaggtgctgtggccctcaggaat
cttgaaattaaagaaaatgctttgagtcagctggatgtaccatttaaagttaaagttggt
catataggcactctcaaccttgtaattccatggaaaaacctttatactcaaccagttgta
gctgtattggaagaaatttatttgctcatagtgccttcttctagaataaaatatgatcct
ttaaaagaagaaaaacaactcatggaagcaaagcagcaagaattaaaaaggatagaagaa
acaaaacaaaaagtagatcaagaacaacatcagaatgagaagcaagatacttttgcagaa
aaattagtcactcagatcataaaaaatcttcaggtgaaaatttccaacattcatatccgt
tatgaagatgatattacaaatcgaaacaaaccactgtcctttggtgtttcccttcaaaat
ctcagcatgcagacaactgatcaaaactgggttccatctttacatgatgaaactgagatg
agactatttcgtaagttaatccgattggataatctttttgcctattggaatgtgaaatct
ccaatgttttatctttacgattatgatgaatcattggacagcttgaggaatggcattgtc
aataaaaaaaatgttctaagaggttatgattttgtctttcgccccatatctgctaatgcc
aaactccagatgaatcgccgatcagattttgacttctctgaccccaaaataaacttggaa
gttgagttacataaaatagcaattgaatttaataaaccgcagtatttcagtgttgtggag
cttcttgagtcagttgacatgatgaaacaaaatctgccttacaggaagttcaaacctgat
gtgcctcttcatcatcacgccaaggaatggtggaattatgctatacgtggtgttcttgaa
gtaaatgttggccccaaattacgaatgtggtcgtggaagcatattaatgcacatagacaa
aaaatgaagcagtataaagaactgtataaaaaaaagctaacaagtaagaagccatctggt
gaaattctcatgtctttggaggaattggagaaaaccctggatgtcttcaatataactata
gtgagacaacaggcagaagttgaggtaaagaaagctggacataggatttatagagaagga
gtaaaagatccagaggataataaaggatggtttagctggctgtggactcggtcagaatca
aaaaccaaacagactagaaagcaacccgatgttaaacctggaattcttgaagaaatgttg
acacctgaagaaaaagttttactctatgaagccattggctatagtgaaacagcagttgat
ccaactttgccaaaaacatttgaagccatgaggattttcattcacttgaaaagtatgtct
gttgttttaagagagagtcaccaaaaacctgagctcatagacattgtagtggaagaattt
agttcatcgattgtgcaaagaccaggagcacaagcaataaaatttgaaaccaaaattgac
tcgtttcatgttaccggcctaccagataatttaagaaaaccccacctcctgacttcattg
gataatgtgtcccttttccgaattgtattcgagataaatccactggatgaaactgttgct
cagaggtgtattgtagaagctgaacctttagaaataatatatgatgcaaggacagtgaat
agtatagtggaattcttcagacctcctaaagaggtgcacctagcacagctcacttcagca
actttgacaaaacttgaagaatttcgagataagacagcaacaggtctgctgtacattatt
gaaacacagaaagttcttgatctcagaattaatttgaaggcttcgtatattattgtccca
caaaatggaattttcagccctacatcaaatctacttcttttggatcttggtcatctaatg
gtgacgagtaaaagtcgtttggaattaccagatgtgaagcaaggtggacccaatcttgaa
gcgataagggacagagcttacgattcctttgatgtccagctaacaagcatacagctgctt
tatagtagagtgggtgagaattggaaagaggcacgaaaacttaatatatctacacaacat
atcttggtacccatgcatgtcaatgtggaactctctaaggcaatggttttcatggatatt
aaaatgcccaaattcaagattactggaaagttacctcttgtttccatacaagtcacagat
aaaaaactgcaagagattatggaattggttgaaagcattccaaaacctgaacctgtaact
gatgtccctgcacctgtcaaatcatttcagactcaaacatctatttccttgggagcatca
cagaaaataattcccttcttggacctttcatgtgctactgaagatgaatcagaggaagaa
ttctttgatgcgccctctagtcccctggaagcgccttgtgagtttctagctggagttaaa
agtgttcatcaaagaaagttacaaaagcaagagtatcgggttaatttgactcagtttaaa
ataagatttgaagtagaagaggttttgattcagttgtatcacccttgaggaagattatga
actgcctgttgctaagaaatttgatgttttaggtgtcaggcatggaagtttgaaattaga
acatttgatttgaaattagatgaaaataaaaaaccagtatatttggtcacaacactggat
aacacagtggaagacctgttaacactggagtatgtgaaggctgaaaaaaatgcacctaac
ttaaaaagtacctatggcagtgttttacagctgatcaaggtgaatttttcctctttggat
attcatttacatactgaagcacttctaaatacaataaattactttaataaaatccttcca
ccctccatgggaacatcagcctcagtgtctactgtggagactgaagacaaaggagaaatc
attaaaaaattagctttcaagcaatccatgaatgaagatattattacattgcagattttt
gcagaattgtcatgtttacagatttttattcaagaacagaaacgtaacatttctgaaatt
aagattgaagggcttgattctgaggtgattatgaggccttcagtaactgaaataaatgca
aagctaagaaatataattgttttggattcagatacaatggctgtatacaaaaaggctgtt
tatatcactgaaaaagaggttttcagcttcagaatgatttcttacatggatgcaactgct
ggttctgcgtacacagacatgagtgtggtagaccttcagattaatttaactgttggttgt
atcgaagtagtttttctcacaaaatttctatattctatattggcttttatagataatttt
caagcagctaaagaagctttggctgaagcaactgttcaggcagcagaaatggctgctact
ggtgtaaaagaactggcacaaaggagtttaagattagcactggacgttaagataaacgcc
ccagtggtaatcatcccacagtcgccagattcaacaaatatttttgtagctgattttgga
ttaattacaatgaccaataaattcattatggtgacagagagccagagcaatcctccacct
gttattgacctcataacaatcaagctgagtgaaatgagactttacaggtctcagtttatt
aatgaggagtaccaagaagtactggatctactactgccattaaatcttgaagtggttgtt
gagcgaaatctatcctgggattggtaccaggaagttccttgttttaatgtaaatgctcag
ttaaaacccatggagttcatccttagtcaagaagatttaacaactatttttaaaactttg
tatggaaatctgtggtacgaaccaggtgttagtgcctcacctgccataactaaagaccaa
agcagcggtgccagtgtggtcactaacgcgtcaccccagtcagcaggagcaactgtagtg
acagctgctgtggtggaagtatattcacgtggctctcaagttaagacgatgctgaatata
agtttcaaaactgattatctcaccatgatgctatatagtccaggtcctaaactgacttcc
ttttcagatgttcgtgatccttctctgcagcttgctgaatttaaattggaaaatattata
agttctttaaaaatgtatacagatgacaatacagtttcttctttctcattaaaaaactgt
attttggatgacaaaagacctcatgtcaagaaagcaacccccagaatgataggactgact
gttggatttgacaaaaaggacatgatggatgtacagtataggacagtcagagacggttct
gtgactgatgcagtctttcaagaaatgtatatttgtgcaagtgtggaatttttgctgaca
gttgccaatgtctttcttgaggcctacactacaggcactactgtggaaaacactgttcag
acatgggctgcaaaagaagtacctatgcaggaatcagagaaatgggaagttaacattctt
atcaaaaatccagaaattgtgtttgtggctgatatgacaagcagtgacgctcctgcctta
gtcattacaacacagtgtgagatttgctataaaggtgacctggaaaacagcactgtgact
gctgcggttaaagatctccaagtcagagcatgcccgtttcttccagtcaagagaagaggc
agagttgctactgttttgcagccctgtgacttgttttatcaagctactcagacaggtgta
gatccacaagtgatggatatatcagtaaagtcccttacactaaaagtttcaccagttatc
ataaataccatgattactataacttcagcgctttatacaactaaggaaatgatcccagaa
gtaactgtttcttcgatagcacgtttgtgggaaaaaaaggatacaaaagatttaaaaatg
tggttccttgaagaatcaagtgaaactgaaaaaataactcctacaactgaattggtacca
aaaggagaaatgatgaaaatgaatattgattctatttttatagttctagaagctggaatt
ggtcataggacagtacctatgctcttggcaaagtcacgtttttcaggggaaggcaaaaac
tggagcacattaataaatctgcattgtcaacttgaactggaagttcattattacaatgaa
atgtttggtgtatgggagcctttgcttgaacctttagaaattgatcagactgaggatttt
aggccatggactcttggaatcaagatgaaaaagaaacccaaaaaagccattgttgagtca
gatactgaagcagaaaactacaaagtgccagagtataaaactgtcatcagtttcaattca
aaagaccagttaaacgttacattatccaaatgtggccttgtaatgttaaataatttagtc
aaggcatttacagaagctgcgactgaaccttcagctctcttcgtaagggatctagcacca
tttataattttgaattctcttggacttactgtatcagtttcaccaagtgatgcttttaac
gtactcaatgttccattggcaaaatcatacacgttgaaaaatgaagagagtttaaatatg
gattatgtaggaactaaggacaatgatcatttcagtgcaatgaccagtttaagcagcaaa
ctcttttttattctccttacacctgagaaccactctactgccgataagattcctttaaca
aaagtgggacgacgtctgtacacggtgagacacagagaatctggagttgaaagatctatt
gtttgtcagattgatgcggtggaaggaagtaaagcagtaataatccgctcacccgtgcag
attagaaatcattttccagtaccaatttctgtttacgaaggagaaaaattattgggaatt
gctttacctgagaatgaattcaacataccattagcatcttaccgaaatctgattactaag
gggattgaaaatacagtttttactctaaatgaaggacagtccacccatatttatgctgta
caaatggacaaagccagatttcatttaaaattacttaattatcttaatcacgactggaaa
ggtgaatatcaaataagagctaatcaacaagacattagtttcatcactttcacctgtgtt
acagaaatggaaaagactgatttaaatatcgctatccacatgacttacaatactgggcag
actgtggtggcatttcatagcccatactggatggtcaataaaactggtcgaatgttgcag
tataaagcagatggcattcatcgaaagcatccacctaattataaaaagccagttatcttt
tcttttcagccaagtcacttttttaataacaacaaggttcaacttatggtaactgatagt
gagttgtcagatcagttttcaattgacacagtgggtagtcatggagccattaaatgtaaa
ggcccacagttggattatcaagttggtgtcactataaacctcagcagttttaatattaca
agaattgtgacatttactcctttttatatgattaaaaacaaaagcaaatatcatatatca
gtggctgaagagggacttaataaatggctctctcttgatttggagcagtgtatccccttt
tggcccaaagatgcttctagtaaacttcttattcaagttgaaaacagtgaaggtcctccc
aaaaggatatattttaacaagcaagaaaatggtgttttattgcatctgaatgatgagctt
ggaggtattatagcagaagttcatttagctgagcattctacagttattacattttcagat
tatcatgaaggagcagcaccattcctgttaataaatcacaccaggaatgacctcattcag
tacaaacaaagttctcttagtgaggtagaggactctcttcctcctggaaaagcagtgttc
tatacgtgggctgatcccgtgggctctcgaaagctgaagtggagctgtggggaaagcttt
ggtgaagtgacacaaacagatgatatgatgtcagctataaatgttggaaagaagaccatt
tatttagtttcattctttgaaggtctgcagcgcattattttattcactgaagatgcaaag
gtgtttaaagcaacgtatgaaagtgagaaaatggagttagcagagcaagaaattatactg
gctttacaagatgttggaatttctcttgtcaacaattacacaaagcaagaagtggcttac
ataggcattacgagttctgatatagtttgggagacaaagcacaagaagaaggcaagatgg
aagccaatgagtgtaaagcacactgagaagctggaaaaagaatttaaggaatacattgaa
tcttcacctttggaagacaagatcattgagttggacaccattcaggttcgcctaacacct
agtggtaacaacatgaaaattctgcaaccacatgtaataggtctccgaagaaattacctt
ccagcattaaaagttgaacatagcacatctgcacatcagtcgtcattccgagttcaggtt
tacagaatacagatccaaaaccagattcacggtgcaatttttccattcgtattttatcct
gttagacctccaaagtctgtcaccatggactcagcaccaaagccctttactgatgtcagt
attgtcatgagatctgcaggacattcccagatatcacgtattaagtatttcaaagtattg
attcaagaaatggatcttaggttagatcttggatttatctatgctttagcagaccttatg
gcaggaaatgaagtgaccgaaaaaacagaggagggactttttaataaagacatagaagct
tttgaagaagactatgaaacaggttcactaatagatcaatcacaagtcagtctttatgag
tattttcatatatctcctatcaagttgcatctaagtgtttcactgagtccgggtagagaa
gaagttaaagatccagaacaacgtggaggactgattccatttcgttctataaatcttttg
ctgaagagtattggtgctactcttacagatgtacaggatgtagtttttaagcttgccttt
tttgagctcgactatcagtttcatacgacatctcaactacagtctgaagtaataaaacac
tattcaaaacaggccattaagcagatgtatgtactcattcttggacttgatgttttggga
aatccctttggcttgattagggaattttcagaaggtgtagaggcgtttttttatgaaccc
taccagggcgccatccagggtcctgaagagtttgtggagggaatggcactgggactcaag
gcgctcgttgggggagctgttggtggcttggctggtgctgcctccaaaatcactggtgct
atggctaaaggtgtggcggccatcaccatggatgaagactaccagcagcagaggagagaa
gccatgaataggcagccgactggtttaagagaagggctcactcgtggaggaaaaggcttg
gtttctggttttgtaagtggcattacaggaattgttacaaaaccaatcaaaggggctcaa
aaagaaggagcagctggtttctttaaaggtgttgggaaaggtttagttggagcagtggcc
aggccaactggaggcatcatagacatggctagcagtacgtttcagggaataaaaagagct
acagagacttctgaagtagagagtctacgacctcctcgattctttaatgaagatggagtt
atcaggccttacaggttgagggatggtactggaaatcaaatgttacaggtcatggaaaat
ggaagatttgcaaaatacaagtattttactcatgtcatgatcaataaaacagatatgttc
atgataacgagacgtggtgtattgtttgtaacaaagggcacctttggacaacttacatgt
gagtggcagtatagttttgatgaatttaccaaagaaccattcattgttcatgggagaaga
ttgcgcattgaagcaaaggaacgggtgaagtctgtattccatgccagagagtttggaaaa
ataataaacttcaagaccccagaggatgctaggtggatcctttcaaagctagaagcagca
agagaaccttctccaagcctctga
DBGET
integrated database retrieval system
