Cavia porcellus (domestic guinea pig): 100715345
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Entry
100715345 CDS
T07777
Symbol
Utp20
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpoc03009
]
100715345 (Utp20)
Ribosome biogenesis [BR:
cpoc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100715345 (Utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT
Motif
Other DBs
NCBI-GeneID:
100715345
NCBI-ProteinID:
XP_003476105
Ensembl:
ENSCPOG00000003129
LinkDB
All DBs
Position
Unknown
AA seq
2769 aa
AA seq
DB search
MKIKPVSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYDEEVETYFFEGLLKWRELNL
TEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQVKNSFAFQPLLDLVVQLARDLQT
DFYPHFPDFFLTITSILETQDTELLEWAFTALSYLYKYLWRLMVKDMGRIYSMYSTLLAH
RKLHIRNFAAESFTFLMRKVSDKNDLFNLMFLDLDEHPEKVEGVGQLLFEMCRGVRNMLH
SCAGKAVKLILQKLGPVTETQTQLPWVLVGETLKHMARSTVLYVHREHLGTFFDCLQEAL
RDLHGKVMNKNSCEGSEQIRRLLETYLVLVQHGGGSRVTSPVGVCQVLSQTVAVAGLSTT
CRKMLLDVISALILGGNVSLPDTLVKETIERIFESALERRLILDFSEVMFCMKQFEQFFL
PSFLAYMENCFSADDRVVQDEALAVLAKLILHKAAPPTASSMAIEKYPLLFCPRTEGSRL
RQKKGAPQGEEPWFPVLARLLALVQSPPRKDTTALAQAWAALVVLPHVRPLDKEQVLPRV
ASFTEALFSTVDSGGSGRGNLFVLCQAVSTLLSVEDSPALLHLVPVEQVKNLVLAFPAEP
SVLLLADLYYQRLSFCGCRELLSEEALMELFPRLQANISTGISKIRLLTIRILNHFDIRL
PELIEEDDVLLERPSAFAILRQAELVPATVSDYREKLLHLRKLRHDVVRTAVPEGPLQEV
PLRYLLGMLYINFSALWEPVIELISSHAHEMESKQFWKVYYEHLERAATRAEKELQRDPE
EEKPTGDESGEQAQEGDVGALYQEQLATKTDCRERLDHTNFRFLLWRALARFPERVEPRS
RELSPLFLRFINNEYYPXDLQVAPTQDLRKKGRGLSAEETEEEPAAGEDEGSEEEEEEEE
APPDEPTQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQTVQKI
TLDCIMTYKHPHILPYRENLQRLLDDKTFKEEIVHFSISEDSAVVKTAHRAELFPILMRI
LYGRMKNKTGSKTQGRSASGTRTAIVLRFLAGTEPEEIEGFLDLLSEPLKHFKMGECHTA
VRHAAEDLHLFRELPLCRQHGILNSLELVLKNISHLIRAYLPRLLQMLLCVTAAAARALD
QREKIRLRFISPLKNLRRLGIKMITDIFVDWESHQFRTEEIEAVFLGAVWPQICRLGSEA
QYSPTPLLKLISVWSRNSRYFPFLAKQKPGHPEYDILTNVFAVLSAKNLSDATAGIVMDM
VDDLLNLPDFEPTDTVPSLPVTGCVYADAPGDTAEAITVGGRLILPHVPVILQYLSKTTI
SAEKVKKKKNRAQVSKELGILSRISKFMKDKEQSSMLITLLLPFLHHGNLAQDTEVDVLV
TVQNLLQHCLDPTSFLKPLAKLFSVIKNKLSRQLLCTVFQGLSDFESGLKYITDVAKLNA
FDKRHLDEINFDVRFTEFQAIMSHIKEMQTVDVNYLIPVMHNCFYNMELGDMSLSDNASM
CLMSVIRRLAALRVAEKDYRELVQRALLERLRKALRSPTESIRQDYTTILSCLIQTFPEQ
LEFKDLVQLTHQQDPEMDFFENMKHIQVHRRARALKKLAKQLSEGRVQLSSKSLQNYIMP
YAMMPIFDEKMLKHENITAAAVDLIGAVCRLLAWPAYVYYLKHFIHVLQAGQANQKLGVS
LLVSVLDAFHFDHKTLEEQMGKIQNEKSPGEVSELPEEEAMDTEPLDADGKEDTSEMPDT
LGATGDPDPAADPTKIAEETRATTQAISFLPRNKEELERTVQAVHTALTGDILPRLHKCL
SATTKREEEHKLIKSKVVNDEEVARVPLAFAMVKLMQSLPQEVMEANLPSVLLKVCALLK
NRAQEIRDVARSTLAKILEDLGVRFLQYVLKELQTTLVRGYQVHVLTFTVHLLLQSLASR
LQVGDLDACLDILIEIFNRELFGAMAEEKEVKQILSKVMEARRSKSYESYEILGKFVGRD
QVTKLILPLKEVLQSTTSLKLARKAHETLRRVVGGLVANPGLASESLLLLSYGLVSENLP
LLTEKEKHPAAPAPDPRLPPESCLLLPPAPVRGGPKAAVARKTNMHVLIEAGLRLLHLSL
KTSKVTSESERALEMLDPFVSLLISCLDSREVKVITGALQCLLWVLRFPLPSVDAQAGQL
TKHLFLLLRDYARLGAARGPNFHLAVNCFKCVTVLLKKVKSHPVTEKQLQVLLAYAEEDI
HDTSRQATAFGLLKAILSRKLLVPEIEDVMRKVSTLAISAQSEPARVQCRQVFLKYLLDY
PLGERLRPSLEFLLAQLNYEHESGRQSALETVACLVAAFPQGLLHENCGLLFVPLCLAMV
NDASATCREMAALVLKALLGKLGPEKRDWLFGMVTSWFGARKRLSRRLAALVCGLFVESE
GAEFDKRLGAVLPVIEQEIDPENFPDVAEEPEEKAADRLLFSFLVLLSKLLRERGFAHLS
APAKTLGRIWGHTHAHLRHPHSWVWLTAAQVFGLLFASCPPEELVAHWKAAKTAKRPPGS
AAVRFLTEDLPLKMRDLALACCHQLHSRFLEPAPGEQVVKNLLFIAKVLYLLEADPEAGC
GEAPEDTEDGPHGGNRTPGRATLLWLLLKLGRMAKLEAAYSPRNPVKRTCIFKFLGAVAM
DLGEDKVKPFLPVIVAPLFRELHSTYAEQDPALKNLSQEVIELLKKLVGLESFSLAFASV
QKQAGEKRALRKRRKAMEFVTNPDIAAKKKLKRHKNKSEAKKRKIEFLRPGYKAKRQRGR
SLRELAMVE
NT seq
8310 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaagcctgtttctcacaagacggagaacacctaccggtttctcacatttgct
gaacggctggggaatgtgaacattgatataattcaccgtattgatagaactgcaagctat
gatgaggaagtggaaacttacttcttcgagggtctgctgaaatggagagaattgaacctt
acagaacactttggaaagttttataaagaagttattgacaagtgccagtcatttaatcag
ttggtctatcatcaaaatgagatcgttcagagtttgaaaactcatctgcaagttaagaac
agttttgccttccagccccttttggacctggtagttcagttggcacgagacctgcagaca
gatttctacccgcactttccggacttcttcctgaccatcacctccatcctggagacgcag
gacacggagctgctagagtgggccttcactgcgctgtcctacctgtacaagtatctgtgg
agactgatggtgaaggacatgggccggatttatagcatgtacagtacactcttggctcac
agaaaactacacataagaaattttgctgctgaaagctttacttttttgatgagaaaggtc
tcggataaaaatgaccttttcaatttaatgtttcttgatcttgatgaacatccggaaaaa
gtggagggtgttgggcagttactctttgaaatgtgcagaggcgtcagaaacatgcttcac
tcctgtgcgggcaaggcagtgaagctaattctgcagaagctcggaccagttactgaaaca
cagactcaacttccctgggtcttagtaggagaaaccctaaagcacatggccagatccact
gttctctacgtccacagggagcatctgggtacattttttgactgtttgcaggaggcgctc
cgggatcttcatggcaaagtaatgaacaagaactcatgcgaaggctccgagcagatccgg
aggctgctggaaacctacctggtgctcgtgcaacacgggggcgggtccagggtaaccagc
cccgtgggcgtctgccaggtgttatcccagacagtggctgtagccggtctctccacaact
tgccggaagatgctcttggatgtgatttctgctttgatccttggtggaaacgtttccctg
ccggacaccctcgtcaaggagaccatagaaagaatctttgagagcgcattggaaagacgt
ttaattttggatttttctgaagtcatgttttgtatgaagcagtttgagcagttttttctc
cccagctttcttgcctacatggagaattgcttctcagctgatgaccgcgtggtccaggac
gaagccctggctgtcctggccaagctcattctgcacaaagcagctcctcccactgccagc
tccatggcgattgaaaagtaccctctgctcttctgcccaaggaccgagggatcccgcctc
agacagaagaagggtgcgccccagggtgaagagccatggttcccggtcctggcccggctc
ctggctctcgtccagtcacccccgaggaaggacaccactgcccttgctcaggcgtgggct
gcgctcgtcgtgctgccgcacgtgaggcctctggacaaggagcaggtgctgccgcgggtg
gccagcttcaccgaggcgctcttcagcaccgtggacagcggcggctctgggcgaggaaac
ttgtttgttctctgtcaagctgtgagtaccctgctgagtgtggaagactcccctgcactg
ctccatctggttcccgtggagcaagtgaagaacttggtgctggcgttcccggcagagcca
tccgtgttgctgctggccgacctctattaccagagactgtccttctgcggctgcagggag
ctgctctcagaggaagcgctgatggagctgttccccaggttacaagccaacatttcaacc
ggcatatccaagattcggcttttgacaataagaatcctgaaccattttgatatccggctt
ccagaattgatagaggaggatgatgtgctcttggagcggccgtccgccttcgctatcctg
cgccaggcagagcttgtccccgcgaccgtgagtgactacagagagaagctgcttcacttg
aggaaactgaggcacgacgtggtacgcaccgcggtccccgaggggccattgcaggaggtg
ccactccggtacctgctgggcatgctatacatcaacttcagcgcactctgggagccggtg
atagagctcataagttctcatgctcatgaaatggaaagcaagcagttctggaaagtgtac
tatgaacatctagaaagagcggccacccgtgcggaaaaagagctgcagagggacccagag
gaggagaagcctactggagatgaaagcggggagcaggcccaggaaggcgacgtcggggcc
ctgtatcaggagcagctggcgacgaagacggactgccgggaaagactagaccacaccaac
ttccggtttctgctctggcgggcgctggcaagattcccagagagagtggagccccggtcc
agggagctgtccccgcttttcctgaggtttatcaacaatgagtattacccangcgatctg
caagtggctccaacccaagatctacggaaaaagggcagagggctttcggccgaggaaaca
gaagaggagcctgctgccggggaggatgagggttcagaggaggaggaggaggaggaggag
gctcccccagatgaacccacacagaagaagaagacacggagagcggcagcaaagcaatta
attgctcatctgcaagttttctctaaattttcaaacccacgggctttatatctggaatcc
aaattatatgagctgtatcttcagctattgctacaccaggaccaaacagtgcagaagata
accctggactgcataatgacgtacaaacatcctcatatccttccgtacagggaaaacctg
caaaggttgcttgatgacaaaacctttaaggaagagatagtgcatttcagcatttcagaa
gatagtgctgtggtgaaaacagcccaccgagcagaattgtttcctattctgatgagaatt
ctctacgggcgcatgaagaacaagactgggagtaagacccagggcaggtccgcctcgggc
acccgcacggccatcgtcctgcgcttcctcgcggggaccgagcccgaggagatcgagggc
ttcctagacctgctgtcagagcccctgaagcacttcaagatgggagagtgccataccgca
gtccggcacgcagccgaggacctgcacctgttccgtgagctccccctgtgtcgccagcac
ggcatcctgaacagcctggagctcgtgctaaagaacatcagccacctcatccgtgcgtac
ttaccccggctgctgcagatgctgctctgcgtcacggctgccgccgcacgcgccctggac
cagcgggaaaagatacggctgcggtttatcagccccctgaaaaatctgcggcgtctggga
attaagatgatcaccgacatctttgtggactgggaatcccaccagttccgaaccgaggaa
atcgaggctgtgtttctcggcgccgtctggccccagatctgccggcttggatctgaggct
cagtattcgcctactcctctgctgaagctcattagtgtctggagcagaaattcgaggtat
tttccttttctggccaaacagaagccgggacacccggaatatgacatcctgaccaacgtc
ttcgcagttctctcagcaaagaacctctccgatgccacagctggcatcgtgatggacatg
gttgatgacctcctgaaccttccagattttgagcccacagacacagtgcccagcttgccg
gtgactggctgcgtgtacgccgatgccccaggcgacacggctgaggcgatcactgtgggg
ggaagactgatcctaccgcacgtgcctgtgattcttcagtatctcagcaaaaccacaatc
agtgcggaaaaggtgaaaaagaagaagaacagggcgcaggtcagcaaggagctcggcatc
ctgtccaggatcagcaagtttatgaaagacaaggaacagagctccatgctcatcacactg
ctcctccccttcctgcaccacggcaacctcgcgcaggacacagaggtcgatgtcctggtg
acagtgcagaacttgctgcagcactgcctggaccctacaagcttcctcaagcctctggcc
aagctcttctccgtcattaagaacaagctgtccagacagttgctgtgtacagttttccag
ggtctttctgatttcgagagtggactaaaatacattactgatgttgccaagctgaacgcc
tttgataagaggcatctggacgaaatcaactttgacgttcgctttaccgagttccaggcc
atcatgtctcacattaaagagatgcagaccgtggatgttaactacctgattccagtgatg
cataattgtttctataacatggagctcggggacatgtccttaagtgacaacgccagcatg
tgcctgatgagcgtcatccggaggctggccgccctgcgcgtcgcagagaaggactaccgg
gaactcgtccagcgcgccctcctggagaggctgaggaaggcgctaaggagccccaccgag
agtattcgacaggactataccaccatactttcctgtttaatccaaaccttcccggagcag
ctggagtttaaagatctggtgcagctcactcaccagcaagacccagaaatggacttcttt
gagaacatgaagcacattcaggtccaccggagagcacgagccctgaagaagctggcgaag
cagctctcggaaggcagggtgcagctgtcttccaagtctctgcagaactacatcatgcct
tacgctatgatgccaatttttgatgagaaaatgctcaagcacgagaacatcactgcggcc
gccgtggacctcatcggggccgtgtgcagactcctcgcctggccagcgtatgtctactac
ttgaagcacttcatccatgtcctgcaggcagggcaggccaaccagaagctgggcgtcagc
ctcctggtgtcagtgctggacgcgttccactttgaccacaaaactctcgaagagcaaatg
ggaaaaattcagaatgaaaaaagcccaggggaggtgtcagagctcccagaggaggaggcc
atggacaccgagcccctggatgcggacgggaaggaggacacgagcgagatgccagacacc
ctgggggccacaggggaccccgacccagcagccgaccccaccaagatagccgaggagacc
agggccaccacacaggccatctccttcctccctcggaataaggaagagctggagaggaca
gttcaagctgtccacacagccctcaccggggacatcctgccgcggctgcacaagtgcctg
tcggccacgactaaacgggaagaagagcacaagctcatcaagtcaaaggtggtgaacgac
gaggaggtggcccgtgtgcccttagcattcgccatggtgaagctgatgcagtccctccca
caggaggtgatggaggccaacctgccgagtgtcttgctgaaggtgtgcgccctcctaaag
aacagggcgcaggagatcagggacgtggcccgcagtactctggccaagatcctggaggac
ctgggcgtgcgcttcctgcagtacgtcctgaaggagctccagaccacgctggtgcgcggc
taccaggtgcacgtgctgaccttcactgtccacctgctgctgcagagccttgccagccgc
ctgcaggtcggggacctggacgcctgcttggacatcttgatcgagatcttcaaccgggag
ttatttggggccatggctgaggagaaggaggtgaagcagatcctctccaaagtcatggag
gcgcgaagaagcaagagctacgagtcctacgagatcctgggcaagttcgtggggagagac
caagttacgaagctcatcctcccgctgaaagaggtcctgcagagcaccacgagcctgaag
ctggcccgcaaggcccacgagaccctgcggcgcgttgtcggagggctggttgccaacccg
ggcctggcctccgagtccctgctgctgctgagctacggcctggtcagcgagaatctgccg
ctgctgacggagaaggagaagcacccagcagcccctgcgcctgacccacggctgcccccc
gagagctgcctcctgctccccccggccccggtccggggtgggccaaaagctgcagtagcc
aggaagaccaacatgcatgtcctaatcgaggctgggctgcggctgctgcatctgagcctg
aagacgtccaaggtcacgtccgagagcgagcgtgccctggagatgctggacccgttcgtg
tccctcctcatcagctgcctggactcccgggaggtgaaggtgatcaccggcgccctgcag
tgcctcctctgggtcttgcgcttccctctgccgtcggtggatgcccaggcagggcagctg
accaagcacctcttccttctgctgagggactacgcccggctgggggccgcccggggcccc
aacttccacctggctgtgaactgcttcaagtgtgtgaccgtcctcttgaagaaggtcaag
tcccacccggtcactgagaagcagctgcaggtcctgctggcctacgccgaggaggacatc
catgacacttccagacaggccactgccttcggcctcctgaaggccatcttatccaggaag
ctactggtcccagaaattgaagacgtcatgcgcaaggtgtccacgctggccatttccgcg
cagagcgagcccgccagggtccagtgccgccaggtcttcctgaagtacctcctggactac
ccactgggggagcggctgcggcccagcctggagttcctgctcgcgcagctcaactacgag
cacgagagcgggcgccagtccgccctggagacggtcgcctgccttgtcgccgccttcccg
cagggcctgctgcacgagaactgcggcctgctctttgtcccactctgtctggccatggtg
aacgacgcctcggccacctgcagggagatggcggccctggtgctcaaggccctgctcggc
aagctgggccccgagaagcgggactggctcttcggcatggtcacctcctggttcggagcg
aggaagcggctgagcaggcggctggccgccctggtctgcgggctcttcgtggagagcgaa
ggtgccgagttcgacaagaggctgggcgctgtgctgcccgtcatcgagcaggagatcgac
cctgagaacttcccggacgtcgcagaggagccggaggagaaggccgccgaccgcctgctc
ttcagcttcctggtgctgctcagcaagctgctccgggagcgcgggttcgcgcacctctcc
gcgcccgccaagacgctgggcaggatctggggtcacacacacgctcacctgcgccacccg
cacagctgggtgtggctcacggccgcccaggtcttcggcctgctcttcgcctcctgcccg
cccgaggagctggtcgcgcactggaaggcggcgaagacagccaagaggcccccgggctcc
gcggcagtccgcttcctcacggaggacctccccctcaagatgagggaccttgccctggcc
tgctgccaccagctgcactccaggttcctagagccagccccgggcgagcaggtcgttaag
aacctgctgttcatcgccaaagtcttgtacctgctggaagcggatcccgaggctgggtgc
ggcgaggcaccagaggacaccgaggacggcccacatggagggaacaggacaccaggccgc
gccacgctgctctggctgctcctgaagctggggcgtatggccaagctggaagccgcctac
tcgccacggaaccccgtgaagagaacctgcatcttcaagttcctgggcgccgtggccatg
gacctgggcgaagacaaggtcaagcccttcctgcccgtgatcgtggccccactgttccgg
gagctgcacagcacctacgccgagcaagaccctgcgctgaagaacctgtcgcaggaggtc
atcgagctgctcaagaagctggtcggcctcgagagcttctccctggccttcgcctccgtg
cagaagcaggcgggcgagaagcgggcgctgcggaagcggaggaaggcgatggagtttgta
accaaccctgacattgctgccaagaaaaagctgaagaggcataaaaacaaaagtgaagcg
aagaagagaaagattgaattcctgcgtccaggctacaaggccaagaggcaaagaggccgc
agcctgcgggagctggccatggtggagtag
DBGET
integrated database retrieval system
