Cavia porcellus (domestic guinea pig): 100715402
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Entry
100715402 CDS
T07777
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03015
mRNA surveillance pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100715402 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
100715402 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100715402 (Pabpc1l)
03041 Spliceosome [BR:
cpoc03041
]
100715402 (Pabpc1l)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100715402 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
100715402 (Pabpc1l)
Spliceosome [BR:
cpoc03041
]
Complex C
Other components
Complex C specific factors
100715402 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RBD_DEAH11
RRM_occluded
YflT
DUF6262
Phage_Mu_Gam
Motif
Other DBs
NCBI-GeneID:
100715402
NCBI-ProteinID:
XP_013005804
Ensembl:
ENSCPOG00000013633
UniProt:
H0VP64
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MHAGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFS
TFGNILSCKVACDEHGSRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQRERE
AELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEK
HEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKN
LDDSISDEKLRTVFSPYGVITSAKVMTEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGT
KPLYVALAQRKEERKAILTNQYMKRLSTVQALSRPVLGSFQQPNSYFLPTGAQPPAQAPC
CGSSGSVAPVQPAPRWTAQPQRPSTVCPPAASVVRPPGLPRRPQANVSSVRQASTQVPHL
APHTKKVANIGTQTMGRAACSTEGPSLLPCTCSSTVHIAHGVPEPAVHVPGQEPLTASML
AAAPLHEQKQMIGERLYHLIPEVYASLAGKITGMLLEIDNSDLLLMLESPESLQAKIEEA
VAVLQAHQAMEQPKAYMH
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccggcggccagggctatccgctctcctcgctctacgtgggcgacctgcacccg
gacgtgaccgaggcaatgctctacgagacgttctctcccgtcggccccatcctgtccatc
cgggtgtgtcgcgacgtggccacccggcgctcgctgggctatgcctacattaactttcag
cagcccgcagacgcggaacgggcactggacacaatgaattttgaggtgatcaaaggtcaa
cccatccgaatcatgtggtctcagcgagacccaggacttcgaaagtcgggtgtggggaac
gtcttcataaagaacttggaggattccattgatagcaaggctttgtatgataccttctcc
acctttgggaacatcctgtcttgcaaggtcgcgtgtgacgagcatggctctcggggcttc
ggctttgtgcattttgagaccaatgaggctgcgcagcaggccatcggcaccatgaatggg
atgctgctgaatgaccgcaaagtttttgttggccacttcaagtctcaacgagaacgggag
gcagagctaggggctcaagccctggagttcaccaacatctatgtgaagaatctcagcgtg
gacatggatgagcagggcctgcaggacctcttctttgcatttggaaacatgctgagtgtg
aaggtgatgagggacaacagtggccactcccggggctttggttttgttaactttgagaag
catgaggaagcccagaaggctgtggaccacatgaacggaaaggaggtgagcgggcagcag
ctgtatgtgggccgggcccagaagcgagcagagcggcagaatgaattgaagcgcaggttc
gagcagctgaagcaggaccggcagacccgctaccggggtgtgaacctgtatgtgaagaac
ctggacgactccatcagtgatgagaagctgaggactgtattctctccctacggagtgatt
accagtgcaaaggtgatgacagagggtgaccacagcaagggatttggctttgtgtgtttt
tcctctccagaagaagcgacaaaggctgtgacagagatgaatggatgtatcgtgggcacc
aagccactgtatgtggcactggcccagcgtaaagaggagcggaaggccatcttgaccaac
cagtacatgaagcgcctctccacagtgcaggccttgagccgccctgtcttgggctccttt
cagcagcccaacagctacttcttgcccactggggcccagcctccagcacaggctccctgc
tgtggcagctctggctccgtggcccccgtccagcctgcccccaggtggacagcccagccc
cagagaccttcgactgtctgccctccagctgcctcagtggttcggccaccaggcttgcct
cggcgcccccaggccaatgtcagcagtgtcaggcaggcctctacgcaggtgccacacctg
gcaccccacaccaagaaagtggccaacattggtacccagactatgggcagggcagcatgc
tctacggaagggccatctctcctgccatgcacgtgttcctcaactgtacatattgcccat
ggggtcccggagcctgccgtgcacgtccctggccaggagcccctgaccgcatccatgctg
gctgcagctccgctccatgagcaaaagcagatgattggggagcgtctctatcatcttatc
cctgaggtttacgcttcgctggctggcaagatcacaggcatgctgctagagatcgacaat
tcagacctgctgctcatgctggaatctccagagtccctccaagctaagatagaagaggcg
gtggcagtgctgcaggcacaccaggccatggagcagccgaaggcctacatgcactga
DBGET
integrated database retrieval system
