Cavia porcellus (domestic guinea pig): 100716163
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Entry
100716163 CDS
T07777
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100716163 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpoc03400
]
100716163 (Lig3)
Enzymes [BR:
cpoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100716163 (Lig3)
DNA repair and recombination proteins [BR:
cpoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100716163 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
DNA_ligase_A_C
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100716163
NCBI-ProteinID:
XP_003469658
Ensembl:
ENSCPOG00000013032
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MLLFVNLTKVTDLLSPKTYIFKRTYFVYIYRQFRALSPPARLWIPCNFPSRPLSYMTLAF
KNLLSRIFQALGQKELCPFREQYHWSDVRQFSNWSDLLHGHCLLQRRKPALLFQGGHLRP
QAICFVFLPGSHVGLCRGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNP
FSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDSEKEQITQHIADLSS
KAAGTPKKKAVVQAKLTTTGQVTSPMKGSSFVTNTNPRKFSGFSAKPNNSEQAPSSPAPK
TSLSSRKCDPKHKDCLLREFRKLCTMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLT
VKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPP
AAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGA
KHVLDALDPNAYEAFKASRNLQDVVERVLQNEQEVEKGPGQRRALSVQASLMTPVQPMLA
EACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIP
QAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLM
DRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIREGLEGLVLKDVKGTY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTV
TKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWEITG
AEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAGDEG
SSTTGGSSGENEGTSGSAVSHKAPKTSPKPSASAKKAERKPSDPSSKGSSKLSAKPPVKP
GEKLGMKSSPVKVGEKRKAADNSPCPAKVKKRAAGQQRGRRAMPAGRR
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgttgctctttgtgaatctcacgaaagttacagatcttctttcccccaaaacgtacatt
ttcaaacgaacatattttgtatacatttacaggcagttcagagccctgtctccaccagcc
agactatggattccttgtaattttcccagccgccccttaagctatatgactttggctttc
aagaacctcctgtcacgaatcttccaagcccttggacaaaaagaactgtgcccatttcga
gaacagtatcattggtctgacgtaagacagtttagcaattggtcagatctgcttcatggg
cactgcctcctccagagaaggaagcctgctctattattccagggaggccatctaagacca
caagccatctgcttcgttttcttgccagggtcgcatgtgggactgtgcagaggcccatgt
gagatggctgagcaacggttctgtgtggactatgctaagcgtggtacagctggctgcaaa
aaatgcaaggagaagattgtgaagggtgtatgccgaattggcaaagtcgtacccaacccc
ttctcagaatctgggggtgacatgaaagagtggtaccatattaaatgtatgtttgagaaa
ctagagcgagctcgggccaccacaaaaaaaattgaagaccttacagagctggaaggctgg
gaagaactggaagacagcgaaaaggaacagataacccaacatattgcagatctgtcttct
aaggcagcaggcacgccaaagaaaaaagctgttgtccaggctaagttgaccaccactggc
caggtgacatccccaatgaaaggctcttcgtttgtcaccaataccaacccccggaaattc
tctggcttttcagccaagcccaacaactctgagcaagccccctcaagccctgcacctaag
acaagtctgtcttcaagaaaatgtgaccctaagcacaaggactgtctgctccgagagttt
cggaagttgtgtaccatggtggctgataatcctagctacaacacgaagacacagatcatc
caggacttcttgcggaagggctcagcaggagatggtttccacggcgatgtgtacctaaca
gtgaagttgctgcttccgggtgtcattaagagtgtttacaacttgaacgataagcagatt
gtgaagcttttcagccgaatttttaactgcaacccagatgatatggcacgagacctggaa
cagggtgacgtgtcagagacgatcagagtcttctttgagcagagcaagtctttcccccca
gctgccaagagcctccttaccatccaggaagtagatgaattccttctgcgactctccaag
ctcaccaaggaggatgagcagcagcaagctctgcaggacattgcttccaggtgtacagcc
aatgaccttaagtgtatcatcagattgatcaaacatgatctgaagatgaactcaggtgca
aaacatgttttagatgcccttgaccccaacgcctatgaagctttcaaagcctcacgtaat
ctgcaggatgtagtggagcgggtccttcagaatgagcaggaggtagagaaggggccaggc
cagagacgggctctgagtgtccaggcctcactgatgacccccgtgcagcccatgctggca
gaggcctgcaagtccatcgagtacgcaatgaagaagtgtccgaatggcatgttctctgag
atcaagtacgacggcgagcgagtccaggtgcacaagaatggtgaccacttcagctacttc
agccgcagcctcaagcccgtcctacctcacaaggtggcccactttaaggactacatccct
caggcttttcctgggggccacagcatgatcttggattctgaggtactcctgattgacaac
aaaacaggcaaaccactgccctttgggactctgggcgtgcacaagaaagctgccttccag
gatgctaatgtctgcctatttgtttttgattgtatctacttcaatgatgtcagcttgatg
gataggcccctgtgtgagcggcggaagttccttcatgacaacatggttgaaattcccaac
cggatcatgttctctgaaatgaagcaagttacaaaagcttcggacttggccgacatgata
aacagagtgatccgggaggggttggaagggctggtgctgaaggacgtaaagggtacatat
gagcctgggaagcggcactggctgaaagtgaagaaagactatttgaatgaaggggccatg
gcagacacagctgacctggtggttcttggggccttctatgggcaaggcagcaaaggtggc
atgatgtcaatcttcctcatgggctgctatgaccccagcagccagaagtggtgcacagtc
accaagtgtgcaggaggccatgatgatgcgacactcgcccgcctgcagaaggaactggac
atggtgaaaatcagcaaggacccaagcaaaatacccagctggctgaagatcaacaagata
tactatcctgactttattgtcccagacccaaagaaagctgccgtgtgggagattacagga
gcagaattctccaaatctgaggcgcacacagctgatgggatctccatccgatttcctcgc
tgcacccgaatccgggatgacaaggactggaaatctgccaccaatctcccccaactcaag
gaactgtaccagctgtctaaagagaaggcagacttcaccgtagtggctggagatgagggg
agctccactacaggaggcagcagtggcgagaacgagggcacctcggggtctgctgtttcc
cacaaggcacccaaaacctcccccaaaccttctgccagtgccaaaaaggctgaaaggaag
ccgagtgaccccagcagcaaaggcagcagcaagctgagtgcaaagccacctgtgaaaccg
ggagagaagctaggcatgaagtcttccccagtgaaagtaggggagaagaggaaagctgct
gacaacagcccatgcccagccaaggtgaagaagcgggcagccggccagcagagaggaagg
agagccatgccagcaggcaggagatag
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