Cavia porcellus (domestic guinea pig): 100716820
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Entry
100716820 CDS
T07777
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03030
DNA replication
cpoc03420
Nucleotide excision repair
cpoc03430
Mismatch repair
cpoc03440
Homologous recombination
cpoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100716820 (Rpa1)
03420 Nucleotide excision repair
100716820 (Rpa1)
03430 Mismatch repair
100716820 (Rpa1)
03440 Homologous recombination
100716820 (Rpa1)
03460 Fanconi anemia pathway
100716820 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpoc03000
]
100716820 (Rpa1)
03032 DNA replication proteins [BR:
cpoc03032
]
100716820 (Rpa1)
03400 DNA repair and recombination proteins [BR:
cpoc03400
]
100716820 (Rpa1)
Transcription factors [BR:
cpoc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100716820 (Rpa1)
DNA replication proteins [BR:
cpoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100716820 (Rpa1)
DNA repair and recombination proteins [BR:
cpoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100716820 (Rpa1)
MMR (mismatch excision repair)
100716820 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100716820 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Ubiquitin_At1g33420
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
100716820
NCBI-ProteinID:
XP_003469585
Ensembl:
ENSCPOG00000000035
UniProt:
H0UT14
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MAGQLSEGAIAAIMQQGDTSIKPILQVISIRPITTGNNPPRYRLLMSDGINTLSSFMLAT
QMNSLVEQEQLAANCICQIDRFIVNTLKDGRRVVILMELKVLKSADMVGVKIGNPLPYNE
GQGQPQAVPSPVTASSPLTGRPQQQNGSSGVGSSVPKAYGASKTFGKPGGSGLLHPSGGT
QSKVVPIVSLTPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRAAAFNE
QVDKFFPLIEVNKVYYFSKGSLKIANKQFSAVKNDYEMTFNSETSVVPCEDDHHLPTVQF
DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATL
WGEDADKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLRGWFDTEGQ
TLDGVSISDLKGGALGTSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQA
CPTQECNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAIL
GQNTAYLGELKDKNEQAFEEVFQNANFRSFTFKIRVKLETYNDESRVKATVMDVKPVDYR
DYGRRLIMNIRRNAGM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggctggccagctgagcgaaggggccattgcggctataatgcagcagggggatacatcc
ataaaacccattctccaagtcattagcatccgccccattaccacagggaataatccaccc
cgttatcgactgcttatgagtgacggaatcaacacactgtcctctttcatgttagcaaca
cagatgaactctcttgttgagcaagaacaattggctgccaactgtatttgccagattgac
cgatttattgttaacactctgaaagatggcaggagagtagttattttgatggagttaaaa
gttttgaaatcagctgacatggtgggagtgaagattggcaatccattgccctataatgaa
ggacaggggcagccacaggcagttccttctccagtcacagcatccagtccgctgaccggc
aggccccagcaacagaacgggagctcaggagtgggttcctctgtacccaaggcttacggt
gcctcaaagacatttggaaaacccggagggtcgggcctattgcatccttccgggggaacg
cagtccaaagtggtacccattgtcagcctcacgccgtaccagtccaagtggactattcgt
gctcgtgttaccaacaaaagtcagatccgtacgtggagcaattctcgaggagaagggaag
cttttctctctagaactagtagatgaaagtggtgaaatcagagctgctgctttcaatgaa
caagtagacaagttcttccccctcattgaagtaaacaaggtgtactatttctcaaaaggc
agcctgaagattgctaacaaacagttctcagctgttaaaaatgactatgagatgaccttc
aatagtgagacttctgtggttccctgtgaagatgatcatcatttacctacagttcagttt
gacttcacaggaattgatgatctagagaacaagtctaaagactcacttgtagacataatt
ggaatctgcaagagctatgaggatgccactaaaatcacagtaaagtctaacaacagagaa
gttgctaaaagaaatatctacttgatggacacatcagggaaagtggtgactgctactctg
tggggagaagatgctgacaaatttgatggttctagacagcctgtgattgccataaaagga
gccagagtttctgattttggtggacggagcctctctgtgctgtcttcaagcactatcatc
atgaatcctgacatccctgaggcctataagcttcgcggatggtttgatacagaaggacaa
accttagatggtgtttccatttctgatctaaagggcggggccctaggaactagcaacacc
aactggaaaactctatacgaggtgaaatccgagaacctgggccaaggcgacaaggcggac
tatttcagctctgtggcaacagtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggagtgcaataaaaaagtgattgaccagcaaaatggattataccgctgt
gaaaaatgcgaccgtgaatttcctaatttcaaataccgcatgatcttgtcggcaaatatc
gcagattttcaagagaatcagtgggtgacttgtttccaggaatctgctgaagctatcctt
ggacaaaacactgcttatcttggggaactgaaagataagaacgagcaggcctttgaagaa
gttttccagaatgccaactttcgatctttcacattcaaaatcagagtcaaactggagacc
tacaatgatgagtctcgagtcaaggccacagtgatggatgtgaagcctgtggactacaga
gactacggcagaaggctgatcatgaacatcagaagaaatgcagggatgtga
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integrated database retrieval system
