Cavia porcellus (domestic guinea pig): 100719064
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Entry
100719064 CDS
T07777
Symbol
Trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpoc03016
]
100719064 (Trub1)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
100719064 (Trub1)
Transfer RNA biogenesis [BR:
cpoc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100719064 (Trub1)
Prokaryotic type
100719064 (Trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
100719064
NCBI-ProteinID:
XP_003475186
LinkDB
All DBs
Position
Unknown
AA seq
349 aa
AA seq
DB search
MAVAEAVVLSSPLKTDVAPILDAAETGSTMARKSVATAAAASIAATARTGAETKVTKAPL
ATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSSEWTKRKKQTLKIGHGGTLD
SAARGVLVIGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQED
IENILQKFTGNIMQTPPLYSALKKDGQRLSTLMKRGKVVEAKPARPVTVYSISLEKFQPP
FFTLDVECGGGFYIRSLVSDIGKALSSCASVLELTRTKQGPFTLEEHALPEDKWTIDDIA
QSLGHCSSLCPAELALKKSQPEEANEQDMNCEYITLSETKGEGDVIKTC
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgctgaagctgtggtgctttcttcgcctttgaaaacagacgtagccccgatc
ttagacgctgcagaaacaggctcaacaatggccagaaagtctgtagcaacagctgcggcc
gcaagtattgcggccacggccagaactggagctgaaacgaaggtcaccaaggcccctttg
gctactaaactgctgtctctcagcggcgtgttcgcagtgcacaagcccaaagggcccact
tcagccgagctgctgaatcggttgaaagagaagctgctggcagaagctggtatgccttct
tcagaatggaccaagaggaaaaaacagaccttgaaaattgggcatggaggaactctagac
agcgcagcccgaggtgttctggtcattggaattggaaggggaacaaaaatgttgaccagt
atgttgtcaggttctaagaggtatatcgccattggagaactgggaaaggccaccgacaca
ctagattctacggggaaagtgaccgaagagaaaccttacgataaaataacacaagaggat
attgaaaatattctacagaagtttactggaaatataatgcagacaccccctctctattct
gcattaaagaaagatgggcagagactttcaactttaatgaagagaggaaaagtagtagaa
gcaaaacctgccaggccagttactgtatacagtatctccctcgaaaaattccagccacca
ttttttacattagatgttgaatgtggaggaggtttttatatcagaagcttggtcagtgac
attggcaaagcgctgtcttcctgtgccagtgtactggagctgacccgaacgaaacagggg
ccttttacactggaagagcacgcccttcctgaagacaagtggaccattgatgacatcgca
cagtcccttgggcactgctcttctctttgcccagctgagttggcacttaaaaaatcacaa
cctgaagaggcaaatgagcaggacatgaactgtgaatacataactctaagtgagacaaag
ggagagggtgatgtaattaagacatgttga
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