Cavia porcellus (domestic guinea pig): 100719120
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Entry
100719120 CDS
T07777
Symbol
Scaf4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoc03021
]
100719120 (Scaf4)
03041 Spliceosome [BR:
cpoc03041
]
100719120 (Scaf4)
Transcription machinery [BR:
cpoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100719120 (Scaf4)
Spliceosome [BR:
cpoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100719120 (Scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100719120
NCBI-ProteinID:
XP_013005207
Ensembl:
ENSCPOG00000012443
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPLAENVTNNEGSPPPPVKISSEPPQTTPNSIPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEESKKEDCAAILPAAPAAPATAPVPAV
ATPAPSTAAAATPAAPAAASSPPQTPFGFPGDGMQQPTYTQHQNMDQFQPRMMGIQDPMH
HQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPAPSMQQTFQPSFQPQNEPLPQKPHQQEM
EVEQPCIPEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSP
RSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPI
ESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWD
VELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPENDVAQNGGAETSHTEP
VSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPMGIPPPGFGPG
VPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINED
TTKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGV
APGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPGP
GGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQQQPPPQQQQQQP
PPQQQPPQQPQPPPQQQPPPQQQPPPAQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRV
ENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDSEERNRRSSGHRDRERDSRDRESR
REKEESRGKEKPEGTDRASGNKATEPPLNRGGIADTASELDKGEAEATVGKPPEESPAEA
TSSIEPEKDSGSAAEAPR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaaccgccc
atctctagagccaagatgattctcatcactaaagctgctattaaagctattaagctttat
aagcacgtagttcaaatagtagaaaaattcatcaaaaagtgtaaaccagaatacaaggtc
ccaggattgtatgtaatcgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataaccgccacattccagtatttgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtgttcaaaattgaaatcattcaacctcttttggacatggcagcaggaaccagtaat
gccgccccattagcagaaaatgtcaccaataatgaaggctctcctccacctccagtaaaa
atttcttctgaacctccacaaaccactccaaattccatacctactgtaccacagctgccc
agctctgatgcttttgctgctgtggctcaactgtttcagacaactcaaggtcagcagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcctgcccttgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagctg
cttgatagatttgattatgatgatgagccagaagctatggaagaatcgaaaaaagaggat
tgtgctgccattcttcctgcagcacctgctgctcctgccacagctcctgtgcctgccgtg
gccacacctgccccctccactgctgccgctgccacgcctgccgcacctgccgctgcctct
tctcctccacagacaccatttgggtttcctggagatggcatgcagcagccaacatacaca
caacatcaaaatatggatcagtttcagcctcgaatgatgggaatacaagaccccatgcac
caccaggtcccacttcctcctaatggacagatgccaggatttggacttcttcccacacct
ccatttcctccaatggcacagtctgtgattcctccagctccatccatgcagcagactttc
cagccctcttttcagccacagaatgaaccacttccacagaagccacatcagcaggagatg
gaagtggaacaaccatgtattccagaagttaagcggcatatgtctgataacagaaagtca
agatctaggtcagcatccaggtcacccaagagaagacgatcaagatctggttctagatcg
cgacggtcacgtcaccgacgttcgcgatctcggtccagagatagacgcagacattctcct
cggtcccgatcccaagaaagacgggatcgggagaaagagcgagaacgtcgacaaaaaggc
cttcctcagatcaaaccagaaactgcaagtgtttgcagtactactctctgggtgggacag
ctggacaaaaggactactcagcaagatgttgcaagtctcttggaagagtttgggcccatt
gaatcaattaatatgattcctccgagaggctgtgcctatatcgttatggttcataggcaa
gatgcttatcgtgccctgcagaaactgagccgaggaaactataaagtgaaccagaagtcc
ataaagattgcctgggccttaaacaaaggaataaaagcagattataaacagtattgggat
gtagaacttggtgttacttatattccatgggacaaagtcaagcccgaggaactagaaagt
ttttgtgaaggaggaatgttggacagtgatacacttaatccagattggaaaggaattccc
aagaagcctgaaaatgatgtggctcaaaatggaggcgcagaaacctcacacacagaacca
gtgtcacccatacccaagcccttacctgtgcctgtgcctcctattcctgttcctgcacct
ataacagtgccacctccacaggtcccaccacatcagccaggtcctcctgtagttggtgcc
ctccagccacctgctttcacgcctcccatgggaattcctcctccaggctttgggcctggt
gttcctccacctcctccccctccaccatttttgcgtccaggattcaatccaatgcattta
ccaccagggtttcttcctccgggacccccacctcctataactccacctgtatccattcct
cctcctcacactccaccaataagcatcccaaactctactatcgctggtataaatgaagac
actacaaaagacttatctattggaaatcccattccaacagtggtgtctggggctagagga
aatgccgagtctggtgacagtgcgaaaatgtatggctctgctgtgccacctgctgcacct
acgaatctgcctacccctcctgtaacccagcctgtttcacttcttggcactcagggagtt
gcacccggccctgtaattgggctgcaggcaccatcgactggtcttctgggggcccgaccc
ggcctgatcccacttcagcgccctccaggaatgcctccacctcatctgcagcgctttcct
atgatgccacctcgtcccatgccaccacacatgatgcacagagggccgccaccaggacca
gggggctttgcaatgccaccacctcatgggatgaaagggccctttcctccgcacgggccc
tttgttaggcctggtgggatgccagggcttgggggcccagggcctggccccggaggtcct
gaagacagagatggaaggcaacagcagcagcccccgccacagcagcagcagcagcagcca
cctccacagcaacagccgccgcagcagccgcagccgccaccacagcagcagccaccacca
cagcaacagccgccaccagctcagcagcagccacagcagtttagaaatgataacaggcag
cagttcaattcaggtagagaccaagaaaggtttggaagaagatcttttggaaatagggtg
gaaaatgaccgcgaacggtatggaaaccgtaatgatgatagagataacagtaaccgtgaa
aggcgagagtggggaagaagaagccccgaccgggacaggcacagagactcagaagagaga
aacagacgctctagtgggcatcgagacagggagagagattctagagatagagagtcacgc
agagagaaggaagaaagccgaggaaaggaaaagcctgaggggacagacagggccagtggg
aacaaagccactgaacctccccttaaccgagggggcatcgcagacactgcttcagaactt
gacaagggggaggcggaggccaccgtggggaaacctcctgaagagtctcctgctgaggct
acctcatccattgaacctgaaaaggattctggctcagcagcagaggctcctcgctag
DBGET
integrated database retrieval system
