Cavia porcellus (domestic guinea pig): 100719266
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Entry
100719266 CDS
T07777
Symbol
Dhx16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100719266 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoc03041
]
100719266 (Dhx16)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100719266 (Dhx16)
Spliceosome [BR:
cpoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100719266 (Dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
SecA_DEAD
Flavi_DEAD
SRP54
Motif
Other DBs
NCBI-GeneID:
100719266
NCBI-ProteinID:
XP_003461049
Ensembl:
ENSCPOG00000015415
UniProt:
H0VTB1
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MATPAALERWVLEELHTVLGLSKRHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLDGPAR
DFALRLWSKVPRKAAVEKPARAAEREARALLEKNRSYRLLEDSEDSSGEIAGRAGSSPQK
KRRKRKHLRKKRQEEEEEEEVASEGGSKAAGSRQQTEKAPESEDEWERTERERLQDLEER
DAFAERVRQRDKERTRNVLERSDKKAYEEAQKRLKMAEEDQKAMVPELRKKSRREYLAKR
EREKLEDLEAELADEEYLFGDVELSRHERRELRYKRRVRDLAREYRAAGEQEKLEATNRY
HMPKETRGQPSRAVDLVEEESGAPGEEQRRWEEARLGAAALKFGARDAAAQEPQYQLVLE
EEEAIEFVRATQLQGDEEPVAPAAAVQAQQKESIQAVRRSLPVFPFREELLAAVAHHQVL
IIEGETGSGKTTQIPQYLFEEGYTAKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVG
YSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKD
VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR
IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKAS
ANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF
DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSE
EILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWC
YENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYVRVRKAITAGYFYHTARLTRSG
YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKA
KELEDPNAKKMPKKIGKTREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggctgcgctggagcgctgggtgctggaggagctgcacaccgtgctggga
ctcagcaagcggcacgtggcccagtttctcatcggaaccgcgcagcgctgcgcctcagcc
gaggagttcgtgcagcgcctgcgcgacaccgacacgctggacctggacgggcctgcgcgg
gacttcgcgctgcgtctgtggagcaaggttcctcggaaggcagctgtagaaaagccagct
cgggcagcagagcgagaggcccgggccctgctggagaagaaccggtcgtaccggctgctg
gaagacagtgaggacagcagcggggagatcgctgggagggctgggagcagcccacagaag
aagcgcaggaagcgaaagcatctccggaagaaacgccaggaggaggaggaggaagaggag
gtggcttccgagggcgggagcaaggcagcagggagcaggcagcagaccgagaaggcgccc
gagtcagaggatgagtgggagcggacagagcgggagcggctgcaggacctggaggagcgg
gacgccttcgctgagcgggtccggcagcgggacaaggagcgcacgcgaaatgtcctggag
cggtcagataagaaggcttatgaggaggctcagaagcggctcaagatggcagaggaggac
cagaaagccatggtccctgagctgcgaaagaagtctcgccgtgagtacctggcaaagcgg
gagcgtgagaagctggaggacctggaggctgagctggccgacgaggagtacctctttggt
gacgtggagttgagccgccatgagcgccgggagctcaggtacaagcggcgggtacgggac
ctggcccgggagtaccgggcagccggggaacaggagaagctggaggccaccaaccgctac
cacatgcccaaggagacacgtggccagccatcgcgtgccgtggacctggtggaggaggag
tccggtgcccccggggaggagcagcggcgctgggaggaggcccgcctgggcgcagcggct
ctgaagtttggggcccgagatgctgccgcgcaggagccacagtaccagctggtgctggag
gaggaggaggccatcgagtttgtgcgtgccacacagctgcagggcgacgaggagcccgtg
gccccggctgctgcggtgcaggcgcagcagaaggagtccatccaggccgtgcgccgcagc
ctgcccgtgttccccttccgggaggagctgctggccgcagtcgcacaccaccaggtgctc
atcatcgagggcgagacgggctcggggaagaccacacagatcccgcagtacctcttcgag
gagggctatactgccaagggcatgaagatcgcctgcacacagccacgaagagtggccgcc
atgagcgtggctgcccgagtggcccgggagatgggtgtgaaactggggaacgaggtcggc
tacagcatccgcttcgaggactgcacgtcagagcgcacggtgctgcgctacatgacagac
gggatgctgctgcgtgagttcctgtccgagccagacctggccagctacagcgtagtgatg
gtggatgaggcccatgagcggacactgcacacagacatcctctttgggctgataaaggac
gtcgctcgtttccggcctgagctcaaggtgctggtggcatcagccacgctggacactgct
cgcttctccaccttctttgatgacgctccggtcttccgaattcccggccgccggttccct
gtggacatcttctacaccaaggcccctgaagctgactacctggaggcctgcgtggtgtcg
gtgctgcagatccatgtgactcagccccccggggacatcctagtgttcctcactgggcag
gaggagatcgaggctgcctgtgagatgctccaggaccgctgccgtcgcctgggctccaag
atccgtgagctcctggtgctgcccatctatgccaacctgccctcggacatgcaggcccgc
atcttccagcccacgccacctggggcccgaaaggtggttgtggcaacaaacatcgcagag
acatcactcaccatcgagggcatcatttacgtgctggacccggggttctgcaagcagaag
agctacaacccacgcacaggcatggagtcactcacggtcacgccctgcagcaaggcctct
gccaaccagcgggctggccgggcgggccgagtggccgcagggaagtgcttccgcctgtac
acggcctgggcctaccagcacgagctggaggagaccacagtgccggagatccagaggacc
agcctgggcaacgtcgtgctgctgctcaaaagcttagggatccatgatctaatgcacttt
gacttcctggaccccccgccctacgagaccctgctgctggctctggagcagctgtatgcc
ctgggagccctcaaccacctgggggagctgaccacgtccgggcggaagatggcagagttg
ccagtggaccccatgctgtctaaaatgatcctggcctcagaaaagtacagctgttcggag
gagatcctgaccgtggctgccatgctgtccgtcaacaactccatcttctaccggcccaag
gacaaagtcgtccacgctgacaacgcccgggtcaacttcttcctgcctggcggagaccac
ttggtcctactgaatgtatacacgcagtgggccgagagcggctactcctcacagtggtgc
tacgagaacttcgtgcagttccgctccatgcgccgggcccgggacgtgcgtgagcagctg
gaggggctcctggagcgtgtggaagtggggctcagctcctgccagggggactatgtgcgt
gtgcgcaaggccatcactgctggctacttctaccacacggctcggctcacacgcagtggc
taccgtacggtcaagcagcagcagacagtgttcatccaccccaactcttccctctttgag
cagcagccgcgctggctgctctaccacgaattagtgctgaccacaaaggagttcatgcgc
caggtgctggagattgagagcagctggcttctggaagtggctccccactattacaaggcc
aaggagctagaagaccccaatgctaagaaaatgcccaaaaaaataggcaagacacgggaa
gagctggggtaa
DBGET
integrated database retrieval system
