Cavia porcellus (domestic guinea pig): 100719268
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Entry
100719268 CDS
T07777
Symbol
Ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpoc03009
]
100719268 (Ddx54)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100719268 (Ddx54)
Ribosome biogenesis [BR:
cpoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
100719268 (Ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
100719268
NCBI-ProteinID:
XP_003461410
Ensembl:
ENSCPOG00000020649
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MAAGKRAAAGPRSPGAMAQWKKKKGLRKRRGAVSQGRDSDSEDGEFEIQAEDDARARQGG
PGRPLPSFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPT
PIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFERLKARSGQTGARALVLSPTRELAL
QTMKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQS
VEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIR
LDVDAKLNEQLKTSFLLVREDAKAAVLLHLLRTAVRPQDQTVVFVATKHHCEYLSELLST
QRVSCAHIYSALDPTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGK
LFLHRVGRVARAGRSGTAYSLVSPDEVPYLLDLHLFLGRSLTLARPSEEPAGGVDGVLGR
VPQTVVDDEDSGLRAALEASLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGL
SLHPLFSSRFEEAELQRLRLVDGIKQYRSRATIFEINASSRDLSSQVMRAKRQKDGRAIA
RFQRGQQERQEGPATPAPACPVPKEEQPLGREEDAGQSVEDIFTEVVGQKRLQPGPDRGA
KRRREEARRRDQEFYVPYRPKDFDSEQGLSVGGATGAFEQQVAGAVLDLMGDEAQNLTRS
RQQLKWDRKKKRFVGQSGQEDKKKIKTESGCYVSSSYKRDLYQKWKQKQKIEDRDSEEEG
PSDRGGPPRRGGKRGRGPGASQPRAPGTAAGRVRSELKTKQQILKQRRRAQKLRFLQRGG
LKQLSARNRRRAQELQRGAFGRGAPSKKGKMRKRM
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcaagcgcgcggcggccggtccgcgttcgccaggcgccatggcccagtgg
aagaagaagaaggggctccggaagcgccggggcgcagtttcccagggccgcgacagcgac
tcggaggatggcgagtttgagattcaggcggaagatgacgcccgggcgcggcaggggggg
cccggccgacctctgcccagcttccccacctcggagtgcacctcggacgtggagccggac
actcgggagatggtgcgggcgcagaacaagaagaagaagaagtccggtggcttccagtcc
atgggcttgagctacccggtgttcaagggcatcatgaagaagggctacaaagtgccgacg
cccattcagaggaagaccatcccggtgatcctggacggcaaggatgtggtggccatggcg
cggactggcagcggcaagacggcgtgtttcctcatccccatgtttgagcggctcaaggcc
cgcagtggccagaccggtgcccgggcgctcgtcctttcgcccactcgggagctggccctg
cagaccatgaagttcactaaggagctgggcaagttcaccggcctcaagaccgccctgatc
ctgggtggggacagaatggaggaccagtttgcagccctgcacgagaaccccgacataatt
atcgccaccccggggcggctggtgcacgtggcggtggagatgaacctgaagctgcagagc
gtggagtacgtggtgtttgatgaggctgacaggctctttgagatgggctttgccgagcag
ctgcaggagatcatcagccggctgcctgggggccaccagacggtgctgttctccgccacg
ctgcccaagctgctggtggagtttgcccgcgcaggcctcaccgagccagtgctcatccgg
ctggacgtggacgccaagctcaacgagcaactcaagacctccttcctcctggtgcgcgag
gacgccaaggccgccgtgctgctgcatctgctgcgcaccgcggtgcggccccaggaccag
accgtggtgtttgtggccaccaagcaccactgtgagtacctctccgagctgctgagcacc
cagcgggtaagctgcgcgcacatctacagcgccctggaccccacggcccgcaagatcaac
ctggccaggttcacgcacggcaagtgctctgcgctcatcgtcaccgacctggccgcccga
gggctggacatcccgctgctggacaacgtcatcaactacagcttccccgccaagggcaag
ctcttcctgcaccgcgtgggccgtgtggcccgggccggccgaagcggcacagcctactcc
ttggtgtccccagacgaggtcccctacctgctggacctgcacctgttcctgggccgcagc
ctcaccctcgcccggcccagtgaggagcccgcaggtggtgtggacggtgtgctgggcagg
gtgccgcagaccgtggtggacgatgaggacagtggcctgcgggctgcgctggaggcgtcc
ctggagctgcggagcctgggccgcgtggcggacaacgcacagcagcagtacgtgcgctcg
cggccagcgccctcgcccgagtccatcaagagggccaaggagctggacctggcggggctg
agcctgcacccgctcttcagctcgcgcttcgaggaggcggagctgcagcggctgaggctg
gtggacggcatcaagcagtaccgctcccgcgcaaccatcttcgagatcaatgcctccagc
cgggacctgagcagccaggtgatgcgcgccaagcggcagaaggacggcagggccattgct
cgcttccagcgggggcagcaagagcgacaggaaggcccggctacccctgcccctgcctgc
ccagtgccgaaggaggagcagccgctggggagggaggaggacgcaggacagagtgtggag
gacatctttaccgaggttgtaggccagaagcggctgcagccaggccctgaccgaggagcc
aagagacggagggaggaggcccggcggagggaccaggaattctatgtcccctaccggccc
aaagactttgacagtgaacagggcctgagcgtcgggggtgctactggggccttcgagcag
caggtggccggcgccgtcctggacctgatgggggacgaggcgcagaacctgacccggagc
cggcagcagctcaagtgggaccggaagaagaagcggtttgtgggacagtccggacaggag
gacaagaagaagatcaagactgagagcggctgctacgtcagcagctcctacaagcgggac
ctctaccagaagtggaaacagaaacagaaaatcgaggatcgagactcggaggaggaagga
ccctctgaccggggaggcccacctcggagaggtgggaagcgagggcgtgggccaggtgcg
tcccagccccgcgcccccggaactgccgcgggccgtgttcgctctgagctcaagaccaag
cagcagatcctgaagcagcgacggcgggcccagaagctgcgcttcctgcagcgtggcggc
ctcaagcagctgtctgcccgcaaccgccgccgggcccaggagctgcagcggggcgccttt
ggccggggcgccccctctaaaaagggcaagatgaggaagaggatgtga
DBGET
integrated database retrieval system
