Cavia porcellus (domestic guinea pig): 100719499
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Entry
100719499 CDS
T07777
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100719499 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100719499 (Xab2)
03041 Spliceosome [BR:
cpoc03041
]
100719499 (Xab2)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100719499 (Xab2)
Spliceosome [BR:
cpoc03041
]
Complex B
Other components
Prp19-related factors
100719499 (Xab2)
Complex C
100719499 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
ARM_TT21_C
TPR_MalT
TPR_1
TPR_15
TPR_21
TPR_NPHP3
AbiH
Motif
Other DBs
NCBI-GeneID:
100719499
NCBI-ProteinID:
XP_003468421
Ensembl:
ENSCPOG00000009283
UniProt:
H0VE99
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSRAERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEERMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIIINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPTQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTSAFWQTWKHFEVQHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPDEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcctttcgcgggccgagcggccggaccttgtctttgaggaagag
gaccttccttacgaggaggaaatcatgcggaaccagttctcagttaagtgctggctccgt
tacatcgagttcaaacagggggctccgaagcctaggctcaatcagctttacgagcgggca
ctcaagctcctgccctgtagctacaaactctggtaccgctacttgaaggcgcgccgggca
caggtgaagcatcgctgcgtgactgaccccgcttatgaagacgtcaacaactgccacgag
agagcctttgtgttcatgcacaagatgcctcgtctgtggctcgattattgccagttcctg
atggatcagggacgagtcacacacactcgccgtacttttgaccgggccctccgggcgctg
cctatcacacagcactctcgaatctggcccctatacctgcgcttcctgcgttcccaccca
ctgcctgagacagctgtgcggggctaccgacgcttcctcaagctgagtcctgagagcgcc
gaggagtacattgagtacctcaagtccagcgaccggctggatgaggcggcacagcgcctg
gccactgtggtaaacgacgagcgctttgtgtccaaggccggcaaatccaactaccagctg
tggcatgagctgtgtgacctcatctcccagaacccagacaaggtgcagtccctcaatgtg
gacgccatcatccgcggcggcctcacccgtttcaccgaccagctaggcaagctctggtgc
tcgctggctgactactatatccgtagcggccactttgagaaggcccgggatgtgtatgag
gaggccatccgcaccgtgatgaccgtgcgggacttcacacaggtgttcgacagctacgcc
cagttcgaggagcgcatgatcgcagccaagatggagacaacctcagagctggggcgcgag
gaggaggacgatgtggacctggagctgcgcctggcccgtttcgagcagctcatcagccgg
cggcctctgctgctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcatcagggccgcccccgggagatcatcaacacctacacagaa
gctgtgcagactgtggaccctttcaaggccactgggaagccccacaccctgtgggtggcg
ttcgccaagttttacgaggacaacgggcagttggatgacgccagagtcatcctggagaag
gctaccaaggtgaacttcaagcaggtggatgacctggccagcgtgtggtgccagtgcggg
gagctggagctgcggcatgagaactatgatgaggccctgcggctgcttcggaaggccaca
gcactgcccgcccgccgggctgagtactttgatggctcggagcccgtgcagaaccgagtg
tacaagtccctgaaggtgtggtccatgcttgccgacctggaggagagcctgggcaccttc
cagtccaccaaggctgtatacgaccgcatcctggacctgcgcatcgccacaccccagatc
atcatcaactatgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcc
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtcggacatctggagcacctac
ctgaccaagttcatcgcccgctatggaggacgcaagctggagcgggcgcgggacctcttc
gagcaggcactggatggctgcccacccaaatacgccaaaaccctgtatttgctgtatgcg
caactggaggaggagtggggcctggctcggcatgccatggcggtgtacgaccgcgccacc
cgggccgtggagcccacccagcagtacgacatgttcaacatctacatcaagcgggccgct
gagatctatggcgtcacccacacgcggggcatctaccagaaggctatcgaggtgctgtcg
gatgagcacgcgcgagagatgtgcctgcgctttgccgacatggagtgcaagctgggagag
atcgaccgcgcccgcgccatctacagcttctgctcccagatctgcgacccgcggacaacc
agcgccttctggcagacgtggaagcacttcgaggtacagcatggcaacgaggacaccatc
cgggagatgctccgcatccgccgcagtgtgcaggccacctacaacacgcaggtcaacttc
atggcctcacagatgctcaaagtgtcaggcagcgccacaggcaccgtgtccgacctggcc
ccagggcagagtggcatggatgacatgaagctgctggagcagcgggcggagcagctggcg
gctgaggcagagcgggaccagccctctcgagcccagagcaagatcctgtttgtgaggagc
gatgcatcccgggaggagctggccgagctggcccagcaggcgaaccccgacgagatccag
ctgggggaggatgaggacgaggatgagatggacctggagcccaatgaggtccgcctggag
cagcagagtgtgccagctgccgtgtttgggagcctgaaggaggactga
DBGET
integrated database retrieval system
