KEGG   Cavia porcellus (domestic guinea pig): 100720068
Entry
100720068         CDS       T07777                                 
Symbol
Pabpc5
Name
(RefSeq) polyadenylate-binding protein 5
  KO
K13126  polyadenylate-binding protein
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03015  mRNA surveillance pathway
cpoc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100720068 (Pabpc5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100720068 (Pabpc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpoc03019]
    100720068 (Pabpc5)
   03041 Spliceosome [BR:cpoc03041]
    100720068 (Pabpc5)
Messenger RNA biogenesis [BR:cpoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100720068 (Pabpc5)
   mRNA cycle factors
    Stress granule specific factors
     100720068 (Pabpc5)
Spliceosome [BR:cpoc03041]
 Complex C
  Other components
   Complex C specific factors
    100720068 (Pabpc5)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_occluded RRM_10 RRM_3 TC1
Other DBs
NCBI-GeneID: 100720068
NCBI-ProteinID: XP_003471011
Ensembl: ENSCPOG00000002555
UniProt: H0VWW1
LinkDB
Position
Unknown
AA seq 382 aa
MGSGEPNPAGKKKKYLKAALYVGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
SLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRF
KFPEERAAEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKG
FGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDEEKLKEEFSAFGSISRAKVMMEVGQGKGFGVICFSSFEEATKAVEE
MNGRLVGSKPLHVTLGQVRRRW
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggggagtggggagcctaatcctgcaggcaagaaaaagaagtacctcaaagcagcccta
tatgtgggtgacttggatccagaagtcactgaggacatgctctataagaagttcaggcct
gctggccctctgcgcttcaccagaatctgccgtgacccagtgactcacagtcctctgggc
tatggctatgttaacttccgttttcctgcggatgctgagtgggccctgaacaccatgaat
tttgacttgattaatggcaaaccattccgcctcatgtggtcacagccagatgaccgttta
agaaagtctggagttggaaatatattcatcaaaaacctggacaaatccatagataatagg
agtctcttttatttgttttctgcttttgggaacattctttcctgtaaagtcgtttgtgat
gacaatggttctaagggttatgcatatgtacattttgacagtctggctgctgccaatagg
gctatctggcacatgaatggagtgcagctcaacaaccgccaagtgtatgttggcagattc
aaattccccgaagaacgagcagctgaagtcagaaccagggataaagcaactttcaccaat
gtttttgttaaaaaccttggagatgacatggatgatgaaaaactgaagacacttttcagt
gaatatgggcaaactgagagcgttaagttagtaagagatgctagtgggaaatctaaaggt
tttggatttgtgagatatgagacacatgacgctgctcaaaaggctgtgttagaccttcat
ggaaaatcagtggatgggaaagttctatatgtaggacgagcacagaagaaaattgaacgt
ttggctgaattaaggcggaggtttgaaaggctgagattaaaagaaaaaagtcggcctcca
ggcgtgcctatttatattaagaacctggatgagaccatagatgaggaaaaactgaaagaa
gaattttctgcatttggatctattagccgagctaaggtgatgatggaagtgggacaaggg
aaagggtttggtgtcatctgcttctcttcctttgaagaggccaccaaagcagtggaagag
atgaatggtcgcttagtgggctccaaacccttgcatgtcacactgggccaggttaggcgc
aggtggtga

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