Cavia porcellus (domestic guinea pig): 100720068
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Entry
100720068 CDS
T07777
Symbol
Pabpc5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03015
mRNA surveillance pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100720068 (Pabpc5)
09123 Folding, sorting and degradation
03018 RNA degradation
100720068 (Pabpc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100720068 (Pabpc5)
03041 Spliceosome [BR:
cpoc03041
]
100720068 (Pabpc5)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100720068 (Pabpc5)
mRNA cycle factors
Stress granule specific factors
100720068 (Pabpc5)
Spliceosome [BR:
cpoc03041
]
Complex C
Other components
Complex C specific factors
100720068 (Pabpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
100720068
NCBI-ProteinID:
XP_003471011
Ensembl:
ENSCPOG00000002555
UniProt:
H0VWW1
LinkDB
All DBs
Position
Unknown
AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
SLFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRF
KFPEERAAEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKG
FGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDEEKLKEEFSAFGSISRAKVMMEVGQGKGFGVICFSSFEEATKAVEE
MNGRLVGSKPLHVTLGQVRRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgcaggcaagaaaaagaagtacctcaaagcagcccta
tatgtgggtgacttggatccagaagtcactgaggacatgctctataagaagttcaggcct
gctggccctctgcgcttcaccagaatctgccgtgacccagtgactcacagtcctctgggc
tatggctatgttaacttccgttttcctgcggatgctgagtgggccctgaacaccatgaat
tttgacttgattaatggcaaaccattccgcctcatgtggtcacagccagatgaccgttta
agaaagtctggagttggaaatatattcatcaaaaacctggacaaatccatagataatagg
agtctcttttatttgttttctgcttttgggaacattctttcctgtaaagtcgtttgtgat
gacaatggttctaagggttatgcatatgtacattttgacagtctggctgctgccaatagg
gctatctggcacatgaatggagtgcagctcaacaaccgccaagtgtatgttggcagattc
aaattccccgaagaacgagcagctgaagtcagaaccagggataaagcaactttcaccaat
gtttttgttaaaaaccttggagatgacatggatgatgaaaaactgaagacacttttcagt
gaatatgggcaaactgagagcgttaagttagtaagagatgctagtgggaaatctaaaggt
tttggatttgtgagatatgagacacatgacgctgctcaaaaggctgtgttagaccttcat
ggaaaatcagtggatgggaaagttctatatgtaggacgagcacagaagaaaattgaacgt
ttggctgaattaaggcggaggtttgaaaggctgagattaaaagaaaaaagtcggcctcca
ggcgtgcctatttatattaagaacctggatgagaccatagatgaggaaaaactgaaagaa
gaattttctgcatttggatctattagccgagctaaggtgatgatggaagtgggacaaggg
aaagggtttggtgtcatctgcttctcttcctttgaagaggccaccaaagcagtggaagag
atgaatggtcgcttagtgggctccaaacccttgcatgtcacactgggccaggttaggcgc
aggtggtga
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integrated database retrieval system