KEGG   Cavia porcellus (domestic guinea pig): 100720171
Entry
100720171         CDS       T07777                                 
Symbol
Lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018  RNA degradation
cpoc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100720171 (Lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100720171 (Lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpoc03019]
    100720171 (Lsm8)
   03041 Spliceosome [BR:cpoc03041]
    100720171 (Lsm8)
Messenger RNA biogenesis [BR:cpoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100720171 (Lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100720171 (Lsm8)
Spliceosome [BR:cpoc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100720171 (Lsm8)
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 100720171
NCBI-ProteinID: XP_003475189
Ensembl: ENSCPOG00000035673
UniProt: A0A286XWZ2
LinkDB
Position
Unknown
AA seq 96 aa
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgacgtctgctttggagaattatattaaccgaactgttgctgttattacttctgatggg
agaatgattgtgggtacactgaaaggttttgaccagaccattaatttgattttggatgaa
agccatgaacgagtattcagctcttcccagggagttgaacaagtggtactaggattatac
atcgtaagaggtgacaatgttgcagtcattggagaaattgatgaagagacagattctgca
cttgacttgggaaatattcgagcagaacctctaaactctgtagcacactga

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