KEGG   Cavia porcellus (domestic guinea pig): 100721744
Entry
100721744         CDS       T07777                                 
Symbol
Mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpoc03400]
    100721744 (Mdc1)
DNA repair and recombination proteins [BR:cpoc03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100721744 (Mdc1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 100721744
NCBI-ProteinID: XP_003461059
LinkDB
Position
Unknown
AA seq 1728 aa
MEDTQAIDWAAEEEEETEQSGESLGYSLEPVGRLRVFGSTYGPEKDFPLYLGKNVVGRMP
DCSVALPFPSISKQHAVIEISAWDKAPVLQDCGSLNGTQILRPPMVLRPGVSHRLRDHEL
ILFADLPCQYRHLEEPMPMPSRGPLSVEETPRIPGDAHASRLPLAEDSDEEEADFLSERC
MEKESRITSSPLTTVVPESDDEGPSALGGSGPSSAFNLDSDTDEDEAGKASAARNSATTK
AEQPRGDRITRDPRLVKALPAVKRDRDTEARKDAENRVALERSNPPGEDSDTDVDEDSRP
AELHLERAQPSGFEDSDTDVEEEGVPETPAAILGKKRLILGAASTGGPGAHGMAHPQESP
AGSDTDVEEQKCPAAGSQDSLVINSDTDDEEEVSAALTLARLKEGRAALWNRGMGTERTR
TQPEVPLEQNQTSLDRDSNSALKKRNPVGRKETLPSAHRGKTEALGTAELGASRPPHGDS
NAGGTAGKRSHGTHPESSQASSTTVHIKTEVEEGAPLGLAVAHLESRQAPVEGTNHTTKQ
LVQPLEARPFDKAYAEGDSASAVAAVRQIQRVAGGDAQEMAPEVGTPGRAPAVQGEQVVH
TVTPGNPTLPQRGGARTPAGRKQKSYLTRTRSSKDSHDAGCEDLDLQATQCFVESESLEA
IQGVEDEPTQAFLCVLSLEPGPSHCSSQAPDALDEPWEVLATQPFCVGESEHPEPRLTAT
CLQAPRSHLSPPRVAPQDQRPGTPAHVEPLGTEGRELQTVKRDRGTAREIAERVTPEIGT
SEREIKEQRAGESTEQLEEEKLARRIKDREPEMQVLAGTAQTPASHKKVDSMSPDKARGS
LKEEAETPKDAYVCASNSLGETVERRALKGVTEKWVLDAECGVEAGLAVALERGESEQGY
RDPKGQGPREGHDAPVSPEPGMGEGHQSGGAREAPVNPSGQPRGLEDGKMPPAESASRDA
PLPAAAPQALVPHLGPFVSQSQKCSAPQPLLPPLPSSEPPVPGPGRAGRQEAPEPALSSE
LKTSRPKPSGRHRPRCRTTSAALPSAAHVLCLPAPIEQPSASAQTSPARTQRSSVRTPEA
VVVTALNLQPSTSADRPVVPKPMSRATRGRVNKSSLQMPEAAEPAAPEPQPATSAGQPIT
PKPASRATRGRTNKSSVQTPEALVHTATSTHQPDTPEPAPQAPRGRANRSSIQTPKPVVP
MASKLQPDTPEPISWATQGRTRKSSVKSPKLVLPTSSEQQLPTSTDRPITPKPTPRATRD
RTSRTSVRTPEAAEPAAPKLQPSSSADRPVTPKPTRWALRGRTGKAPIEITEPAELSARD
PEPPTATGQPVNPESVAHGGAAPESWPPVTTDQHVPWKPSPHTGRGQRQKTAGKRGSGSA
ATNHQPRSEPSFGDQRAGRRRAAASLKAIPGPSFSQPPEAPIQAPQVPKVEAADSFGSTQ
EPQPAASQQRKRPSPGTDPAPLLKRPQREGSHKTVVPKEEEEEVALEKPEKAEDVVTPEP
GKRKRSHTEEEPQEAPKRGLRRTKSTQPSAAPKVLFTGVLDARGEQAVLALGGSLASSVA
EASHLVTDRVRRTVKFLCALGKGIPVLSLEWLHQSRKAGHFLPPDQYVVTDPEQERNFGF
SLQDALSRARERRLLEGYEIYVTPGVQPPPLQMGEIISCCGGTILPSMPRSYKPQRVVIT
CPQDLPRCSLASRAGLPLLSAEFLLTGVLKQEVRPEAFVLSSQEPAST
NT seq 5187 nt   +upstreamnt  +downstreamnt
atggaagacacccaggctattgactgggctgctgaagaagaggaggaaacagagcaatct
ggtgaatccttggggtatagcttggagcctgtagggcgactgcgtgtcttcggcagtacc
tatggaccagaaaaagatttcccactgtaccttgggaagaacgtggtaggccgaatgcct
gactgctctgtagccctgccctttccatccatttccaaacaacatgcagtaattgaaatc
tcggcatgggacaaagcacctgttcttcaggattgtgggagcctcaatggtacccaaatc
ctgaggccacctatggtcctgaggccgggggtgagtcatcgtctgagggaccatgaactg
atcctctttgctgacctgccctgccagtaccgtcacctggaggagcccatgcccatgcct
tcccggggtcctctcagtgtggaggaaacccccaggatcccgggagatgctcacgcctcc
agacttccactggctgaggattcagatgaggaggaggcagattttctttctgagaggtgt
atggagaaagaatcaaggatcacatcatcccctttgacaacagtggttccagaaagtgat
gatgaggggccttcagccctaggtggctctggaccatcttcagctttcaacttggacagt
gacacagatgaagacgaagcagggaaggcctcagcagcgaggaacagtgccacaacaaag
gcagagcagcctagaggtgacagaatcacacgtgaccctcggctggtaaaggctctacct
gcagtgaaaagagacagagacacagaagccaggaaagatgcagagaacagggtggctcta
gaaaggagcaaccctcctggagaggacagtgacacagatgtggacgaagacagcaggcca
gctgagctccacctggaaagagcacagccttctggctttgaggacagtgacactgatgtg
gaggaagagggcgtccccgagacccccgctgccattcttgggaaaaagcggctgatctta
ggcgcagcaagcacaggaggccctggtgcccacggcatggcacatccgcaggagagccca
gctggtagtgacacagatgtggaggagcagaagtgcccagcagcaggaagccaggactcc
ctggtgataaacagtgacacagatgatgaggaggaggtctccgctgcgctcaccctggca
cggctgaaggagggcagagctgctttgtggaacagaggcatgggtacagaaaggaccaga
acccagcctgaggtccctctggaacagaaccaaacctccctggacagagatagcaactca
gccctaaagaagaggaacccagtgggaaggaaagaaacgctccccagtgctcacagaggg
aagactgaagccctgggtacagcagagctgggggcaagcagacctccccatggggacagc
aacgcgggtgggacagcaggtaagcgctcccatgggacccacccagagagcagccaagcc
tcctccaccacagtgcacatcaagacagaagtggaggagggagccccactggggctagct
gttgcacatctggagagccgtcaggcacctgtggaggggacaaaccacaccacaaagcag
cttgtacagcctctagaagccaggccttttgacaaagcttatgcagagggggactctgcc
tcagcagtggcagctgtgcgacagatccagcgtgtggcaggaggggatgctcaggagatg
gctccagaagtggggacccctggcagggcacctgcagtgcaaggggaacaggtggtacac
actgttaccccaggaaaccccaccctgccacagagagggggagcacggacccccgcagga
aggaagcagaagtcctatttgaccaggaccagaagctccaaagacagccatgatgcaggc
tgtgaagatctggaccttcaagccacccagtgctttgtggagagcgagagcctggaagcc
atccaaggtgtggaggacgagcccacccaggccttcctgtgtgtgctctccctggagcct
ggcccttcccactgcagctctcaggccccagatgccctggatgagccatgggaagtcctg
gccacgcagccattctgtgtgggagagtctgagcaccctgagccccgactcactgccacc
tgcctgcaggcccccaggtctcatctgtctccaccaagggtggcaccacaggatcagcgt
ccagggaccccagctcatgtggagccgttggggacagaaggcagagagctgcagactgtg
aagagagacaggggtacagcaagagaaatagcagagagggtaaccccagagatagggaca
tcagagagggaaatcaaggagcagcgagcaggagagagcacagagcagctggaggaggaa
aaattagctaggaggataaaggacagagagccggagatgcaggtgttagctggaactgct
cagacaccagcgtctcacaaaaaggtggacagcatgagtcctgataaggccagggggagc
ctgaaggaagaagcagagacacccaaggatgcatacgtgtgtgcaagcaacagtcttggg
gagactgtcgagagaagagctctcaagggagtcacagagaaatgggtgctggatgcagag
tgtggggtggaggctgggttagcagtggccctggagagaggagagtcagagcaagggtac
agggacccaaaagggcagggcccccgggaagggcatgatgccccagtaagcccagagcct
ggaatgggggaggggcaccagtcaggtggagcaagggaagccccagtgaaccccagcggg
cagcccagaggcctggaggatggcaagatgccccctgctgagagtgcttccagggatgct
cccctgcctgctgcagcaccccaagccttggtcccacacctgggcccctttgtctctcag
agccaaaaatgttccgcacctcagcccctgcttcctccactgccgtcttccgagccaccc
gttcctgggccggggcgtgctgggaggcaggaggctccagagcccgccctgtcctcagag
ctgaagacttcccggcccaagcccagtggcaggcaccgaccccgctgcaggacgacatct
gctgcgctcccctccgccgcccatgtactctgccttcctgctcccatagagcagccttca
gcctcagctcagaccagtccagccagaacacagaggtcctctgtcaggacccctgaagca
gttgtggtgacagccctcaatctccagccatctacatctgcagaccggcctgttgtcccc
aagcccatgtctcgggccactcggggcagggtgaacaagtcctccttacagatgcctgaa
gcagctgaacctgcagcccctgagccacaaccggccacctctgcaggccagcccatcacc
cccaagcctgcatctcgggccactcggggcaggacaaataagtcctctgtccagacacct
gaagcgcttgtacacacggccacctccacacaccagcccgataccccagagcctgcaccc
caggcacctcggggcagggcgaacaggtcctccatccagacccccaagccagttgtccct
atggcctccaagctccagcctgacaccccagagcccatatcttgggccactcagggcaga
actcgtaagtcgtctgtcaagagccccaaactagtcttgccaacgagctctgagcagcag
ctgcctacctccactgaccgacccatcacccccaagcccacacctcgggccactcgggat
aggacaagcaggacctctgtaaggacccctgaagcagctgaaccagcagcccccaagctg
cagccgtccagctctgcagaccggcccgttacccccaaacctacgcggtgggccctgcgg
ggcaggacgggtaaggcccccattgagattactgagccagcagagttgtcagccagggac
cctgagccgcccactgccacaggccagcctgtcaaccccgagagcgtagctcacggtggg
gcggcccctgagtcctggcctcctgtcaccactgaccagcatgtgccctggaaacccagc
cctcacacagggcgtggccagagacagaagactgctgggaaacgcggctctggctcggct
gccactaaccatcagcctcgatctgagccatccttcggggaccagagagcaggcaggcgg
agagcagctgcgtccctcaaggccatcccgggcccttccttttcccagcctcctgaggca
cctattcaagctccccaggtcccaaaggtggaagcagcagatagctttgggtccacccaa
gagccccagcctgcagcctctcagcagcgcaagaggccttcccctggcacagatccagcc
cctctcctaaagcggccccaaagagaaggctcccacaagacagtagtccccaaggaagag
gaggaggaggttgctttagaaaagccagagaaggcagaggatgtggtgactccagaacca
ggcaagaggaagagatcacatacagaggaggagccccaggaagctccgaaacggggcctc
cgcaggaccaaatctacccaaccatcagcagcccccaaagtcctcttcacgggcgtgctg
gatgcccgtggggagcaggctgtgctagccctgggaggcagcctggccagctctgtggca
gaggcctctcacctggtcactgatcgcgtccgccggacagtaaagttcctgtgtgccctg
gggaagggcatccccgtgctctccctggagtggctgcatcagtcccgcaaggctggtcac
ttcctgcccccggatcagtacgtggtgaccgatcccgaacaggagaggaattttggcttt
agcctccaggatgccctgagccgggctcgggagcgaagactgctagagggctatgagatt
tacgtgacccctggggtccagcccccaccactgcagatgggagagattattagctgctgt
ggcggcaccatcttacccagcatgccccgctcctataagccccagagagtggtgatcacc
tgcccccaggacttgccacgctgctccctggcatcccgggccggtctgcccctcctgtct
gcagaattcctcctgacgggggtcctgaagcaggaggtcaggcctgaggccttcgtcctc
tcctcgcaggaaccggcttccacttga

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