Cavia porcellus (domestic guinea pig): 100722013
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Entry
100722013 CDS
T07777
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc04140
Autophagy - animal
cpoc04148
Efferocytosis
cpoc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100722013 (Vps39)
04148 Efferocytosis
100722013 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100722013 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoc04131
]
100722013 (Vps39)
Membrane trafficking [BR:
cpoc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100722013 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Lgl_C
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
100722013
NCBI-ProteinID:
XP_003475761
Ensembl:
ENSCPOG00000006351
UniProt:
A0A286XEU5
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLHHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVSDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGNCTQKCALNWTDIPAAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQKPRFIISGGLNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTEYRKQLQYPNPLPALSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSMWVLRDFPEDGLKIFTEDLPEVEALPRDQVLAFLIENFKSLAVPYLEHIIHVW
EEMGSCFHNCLIQLYCEKVQGLMKEYLLSCPAGKALVSAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPMKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLERVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggttccgatcctagagaagcttcctttgcagatcgactgc
ctggctgcttgggaagaatggcttcttgttggaaccaaacaaggacatcttcttctctat
aggattcggaaggatgttggttgtaacagattcgaagtaactctagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaacaacatttatgtccatgatctgttaacatttcaacaaatcactacagtc
tcaaaggcaaagggagcatcgctgttcacctgtgacctccaccacacagagactggagag
gaggtgttgcggatgtgtgtggcagtaaaaaagaaactgcagctctatttctggaaggac
agggagtttcatgaattgcagggggatttcagtgtatcagatgtacccaagtctatggcg
tggtgtgaaaattctatctgtgtaggtttcaagagagactactacctgatacgggtggat
ggaaaggggtctatcaaagagctctttccaacaggaaaacagctggagcccttagtcgca
cctttggcagatggaaaagtggctgtgggtcaggacgatctcaccgtggtgctcaatgaa
gaggggaactgcacccagaaatgtgccctgaactggacagacatcccagcggccatggag
caccagcccccctacatcatcgcagtgttgcctcgatacgtggagatccgaacgtttgag
ccaaggcttctggtgcagagcattgaactgcaaaagcctcgttttattatctcaggggga
ttgaacattatctacgtggccagcaatcattttgtttggagactcattcctgttcccatg
gcaacccagatccaacagctgctccaggataaacagtttgaattggctctgcaacttgca
gaaatgaaagatgattctgatagtgaaaagcagcaacaaatccatcatatcaagaacttg
tatgccttcaacctcttttgccaaaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcccacccatgtaatgggcctgtaccccgacctgctacccacagaatac
cggaagcagttgcagtaccctaacccactgcccgcactgtcaggggctgagctggagaag
gctcacttagcactgatcgactacctgacgcagaaacgaagtcagctggtgaagaagctg
aatgactctgaccaccagtccagcacctccccgctcatggaaggcacgcccaccatcaaa
tccaagaagaagttgctgcagatcattgacaccaccctgctcaagtgctacctccatacg
aatgtggccctggtggcccctttgctgcgcctggagaataatcactgccacatcgaggag
agtgagcacgtgcttaagaaggctcacaagtacagcgagctgataatcctgtatgaaaag
aaggggctccacgagaaagctctgcaggtgctagtcgaccagtccaagaaagcaaactcc
cctctaaagggccatgagaggacagtacagtatctgcagcacctgggcacagaaaacctg
catttgattttttcctactcaatgtgggtgctgagagactttccagaagatggcctgaag
atatttactgaagatcttccagaggtggaagctctgccccgagatcaagttcttgccttc
ttaatagagaactttaagagtctggctgttccttatctggagcacatcatccatgtctgg
gaagagatgggctcttgcttccacaactgcctgatccagctatactgcgagaaggtgcaa
gggctgatgaaggagtacctgctgtcctgccctgcaggcaaagccctggtctctgctgga
gaggaagagggggagctgggagaataccggcaaaagctgctcatgttcttggaaatttcc
agctactatgatccaggaaggctcatctgcgattttccttttgatggcctcttagaagag
cgagcactcctgctggggcgcatggggaagcatgaacaagctcttttcatctatgtgcat
gtcttgaaggacacgaggatggcggaggagtactgccacaaacattatgaccaaaacaaa
gacggcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcaccccccagtatt
cactgccttgggccaatgaagttggagctgctggaaccacaagccaacctccaggctgca
ctgcaggtccttgagctgcatcatagcaaactggacaccaccaaggccatcaacctcctg
ccagcaaacactcagatcaatgacatccgcatctttctagaaagggtgttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaacctcctccatgcggagttcctgagg
gtgcaggaagagcgtattctgcaccagcaggtgaagtgcatcatcacggaggagaaggtg
tgtatggtgtgcaagaagaagattgggaacagtgcttttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacctga
DBGET
integrated database retrieval system
