Cavia porcellus (domestic guinea pig): 100722260
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Entry
100722260 CDS
T07777
Symbol
Lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X2
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018
RNA degradation
cpoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100722260 (Lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
100722260 (Lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100722260 (Lsm5)
03041 Spliceosome [BR:
cpoc03041
]
100722260 (Lsm5)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100722260 (Lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
100722260 (Lsm5)
Spliceosome [BR:
cpoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100722260 (Lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100722260
NCBI-ProteinID:
XP_005003807
LinkDB
All DBs
Position
Unknown
AA seq
105 aa
AA seq
DB search
MELAVLCVFLCYSSKEGSPNHISKLLQRRELVDKCIGSRIHIVMKSDKEIVGTLLGFDDF
VNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
318 nt
NT seq
+upstream
nt +downstream
nt
atggagttagcagtgttgtgtgtctttctgtgttactcaagtaaagaaggaagccccaac
catataagtaaattgctacaaagaagagagcttgtggacaaatgtataggatcaagaatt
cacatcgtaatgaagagtgataaggaaattgttggcactcttctaggatttgatgacttt
gtcaatatggtgctagaagatgtcactgaatttgagattacaccagaaggaagaaggatt
actaaattagatcagatcttgctaaatggaaataatataaccatgttagttcctggagga
gaaggaccagaagtatga
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integrated database retrieval system
