Cavia porcellus (domestic guinea pig): 100722588
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Entry
100722588 CDS
T07777
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100722588 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoc03041
]
100722588 (Prpf40a)
Spliceosome [BR:
cpoc03041
]
Complex A
U1 snRNP components
U1 related factors
100722588 (Prpf40a)
Complex B
100722588 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100722588
NCBI-ProteinID:
XP_003478739
Ensembl:
ENSCPOG00000013494
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENQPPSRGPGDGERRLSGSTLCSSSWVS
ADGFLRRRPSMGHPGMHYTPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEDCSTSTAPVPTTEIPTTMTTMAAAEAAAAVVAAAAA
AAAAAAAANASTSTSTTNTVGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTNATA
IQDLSVEVTSSAEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKR
VPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQ
RFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRK
RNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRAL
EKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTN
MLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKR
STTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWE
DIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRS
RSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPES
DAEREKDKKEKDRENEKDRTRQRSESKHKSPKKKTGKESGNWDTSGSELSEGELEKRRRT
LLEQLDDDQ
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccaacgatgaggccggggacg
ggagcagagcgtggaggcctcatggtgagtgaaatggagaaccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaccctctgctccagctcatgggtctct
gctgacggcttcctgaggagacggccctcgatggggcaccctggcatgcattatacacca
atgggaatgcacccaatgggtcagagagcaaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgccccctatgggaggaccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcttta
ccgccaggagtaaacagtatggatgtagcagcaggtgcagcatctggtgcaaaatcaatg
tggactgaacataaatcacctgatggaaggacttactactataatacggaaacaaaacag
tccacctgggagaaaccagatgatcttaaaacacctgctgagcaactgttatcaaaatgc
ccttggaaggaatataaatcagattctggaaagccttactattacaattctcaaacaaaa
gaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagc
agcaaacaagaagattgcagcacatcaacagccccagttcctacaacagaaattcctact
actatgacgaccatggctgccgcagaagcagcagctgctgttgttgctgcagcagctgca
gccgcagcagctgcagctgcagccaatgctagcacttccacttctactactaatactgtt
ggaactgttccagttgttcctgagcctgaagttacttccattgttgctactgttgtagat
aatgaaaatacagtaactatatccactgaagaacaggcacagcttacaaatgccactgct
attcaggatctaagtgttgaagtaactagcagtgcagaagaaacatctaaacaggaaact
gtagctgattttactcccaaaaaagaagaggaagagagccaaccagcaaaaaaaacatac
acttggaatacaaaggaagaagcaaaacaggcattcaaagaattattaaaagaaaagcgg
gtaccatccaatgcttcttgggagcaagctatgaaaatgatcattaatgatccacgatac
agtgctttagcaaaattaagtgagaaaaagcaggcctttaatgcctataaagtccagaca
gagaaggaggaaaaagaagaagcaagatcaaaatataaagaagctaaggaatcttttcag
cgttttcttgaaaatcatgagaaaatgacttctacaaccagatataaaaaagcagagcaa
atgtttggagagatggaagtctggaatgcaatttctgagcgtgatcgtcttgaaatctat
gaagatgttttattctttctgtcaaaaaaagaaaaggaacaagcaaagcagttgcgaaag
agaaactgggaagccttaaaaaacatacttgataatatggctaatgtaacatactctact
acttggtctgaggctcagcagtatctgatggataatccaacttttgcagaagacgaggag
ttacagaacatggacaaagaagatgcattaatttgctttgaagaacatattcgggcttta
gaaaaggaagaagaagaagaaaaacagaaaagtttgctgagagaaaggagacggcagcgt
aaaaatagggaatcttttcagatatttttagatgaactgcatgaacatggacaactacat
tctatgtcatcttggatggaattgtatccaaccattagttctgacattagatttactaat
atgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgttgaggacctt
aaagcacgttatcatgatgagaaaaagataataaaagacattctaaaagataaaggattt
gtagttgaagtaaatactacgtttgaagattttgtggcaattatcagttcaactaaaaga
tcaactaccttagatgctggaaatatcaagttggctttcaatagtttactggaaaaggca
gaagcccgcgaacgtgaaagagaaaaagaggaggctcggaaaatgaagcgaaaagagtct
gcattcaagagtatgttgaaacaagctgctcctcccatagagttggatgctgtctgggaa
gatattcgagagagatttgtaaaagagccggcatttgaggatataactctagaatcagaa
agaaaaagaatatttaaagattttatgcatgtccttgagcatgagtgtcagcatcatcat
tcaaagaataagaaacattctaagaaatctaagaaacatcatagaaaacgttcccgctct
cgatcgggatcagattcagatgatgatgacagccattcaaagaaaaaaagacagcgatca
gagtctcgttctgcttcagaacattcttctagtgctgagtctgagagaagttataaaaaa
tcaaaaaagcataagaagaaaagcaagaagaggagacataaatctgattcgccagagtca
gatgctgaacgagaaaaggataaaaaagaaaaagatcgggaaaatgaaaaagacagaact
agacagagatcagaatcaaaacacaaatcacctaagaaaaagactgggaaggagtctggt
aattgggatacttctggcagtgaactaagtgaaggagaattagaaaagcgaagaagaacc
cttttggagcaactggacgatgatcaataa
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