Cavia porcellus (domestic guinea pig): 100722648
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Entry
100722648 CDS
T07777
Symbol
Ddx50
Name
(RefSeq) ATP-dependent RNA helicase DDX50 isoform X1
KO
K13183
ATP-dependent RNA helicase DDX50 [EC:
5.6.2.7
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoc03041
]
100722648 (Ddx50)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100722648 (Ddx50)
Spliceosome [BR:
cpoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100722648 (Ddx50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
100722648
NCBI-ProteinID:
XP_003473712
Ensembl:
ENSCPOG00000002131
UniProt:
H0UXT7
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MPGKLLWGDIMELEAPLEEPESQRKERHKNDRRKSRHRHDSDEKTETRENGVTDDPDAPK
PKKAKIKEKLNGDTEEGFSRLSDEFSTSHKSRRKDLSNGDIDECEKKSKRVSSLENSHKS
SDNKLEETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQA
RTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVA
CFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFA
EQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATT
VEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGD
IAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGR
AGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAA
VDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESSEEIQDV
SCAWKELNRKLSSNTVSQITRMCLLKGNMGVCFDVPTTESEKLQAEWHDSDWILSVPAKL
PEIEEYYDGNTSNSRQRSSWSSGRSGRSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRNG
NRNRSRSGGHKRSFD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggaaactcctctggggggatattatggagctggaggcacccttggaagagcct
gagagccagaggaaggagcggcacaagaatgatagaaggaagtcaaggcaccgtcatgac
tcagatgagaaaaccgaaacaagagaaaatggtgttacagatgacccagatgctcccaag
cccaaaaaagctaaaattaaagagaaactaaatggagatactgaagaaggattcagcaga
ctttcagatgaattttctacatctcataaatcaagaagaaaagatctatcaaatggagat
attgatgaatgtgaaaaaaaatctaaacgagtgtcatccttagaaaattctcataaatca
agtgataataaactagaggagactctaacacgtgaacagaaagagggagccttctccaat
ttctctatttctgaagagactataaagcttctgaaaggtcgaggggtaacatacctcttt
cctattcaagtcaagacctttggtcccgtatatgaaggaaaagatttaattgctcaagca
cggactggaacaggaaagacattctcttttgccatacccttgattgaaaggctccaaaga
aatcaagaaacaattaaaaaaagccgctcaccaaaggtacttgttttggctccaacacgg
gaactggcaaaccaagtagccaaagacttcaaagatataactaggaaactcagtgtggca
tgtttttatggtggaacatcatatcaaagccaaataaatcatattcgaaatggtattgac
attttggttgggacccctggtcgtatcaaagaccacctgcagagcggccgcctggatctt
tctaaactgcgccatgttgtacttgatgaagtggatcaaatgttagatttaggttttgct
gagcaagtggaagatattatccatgaatcctacaaaactgattctgaagacaatcctcag
actttacttttttctgcaacttgcccacagtgggtatacaaagttgcaaaaaaatacatg
aaatccagatatgaacaggttgaccttgttggaaaaatgactcaaaaggctgcaactact
gtggaacatttggctatccagtgtcactggtctcagagaccagcagttattggagacgtc
ctgcaagtctacagtgggtctgaagggagggccattatcttctgtgagaccaagaagaat
gtaactgaaatggccatgaacccacacataaaacagaatgcccagtgtttacatggggac
attgcacagtcacaaagagaaattacactgaaaggcttcagagaaggtagttttaaagtt
ttggtggccaccaatgtggctgcccgtggtctggacattcctgaagttgatctggtgatt
cagagttctcctccacaggatgttgagtcctatattcatcgttctggacgcacagggaga
gctggcagaacagggatttgcatatgtttttatcaaccgagagaaagaggtcaactaaga
tatgtggaacaaaaagcaggaattacttttaaacgtgtaggtgttccttctacaatggat
ttagttaaatctaaaagcatggatgccatcaggtctctggcttctgtttcttatgctgct
gttgattttttccgaccatcagctcaaagactgatagaagagaaaggggcggtggatgct
ttggctgcagcattagcccacatttctggtgcatcgagctttgaaccacgttctttgatc
acctctgataaggggtttgtgaccatgactctggagagctcagaagaaatacaagatgtc
agctgtgcttggaaagaacttaacagaaagctgagcagtaatacagtatcccaaattacc
agaatgtgcctcctaaaaggaaatatgggtgtttgctttgatgttcccacaactgagtca
gaaaagttacaggcagagtggcatgattcagactggatactttcagtgccagccaaatta
cctgaaattgaagaatattatgatggaaacacatctaattccagacagaggagtagctgg
tcaagtgggagatctggccggtcaggccgctcaggtggccgatctggtggcaggtcaggt
agacagagtcgacaggggagtcgctcaggaagtcgacaagatggtagaagacggaatgga
aacagaaatcgatcaagaagtggaggccacaaacggagttttgactga
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