KEGG   Cavia porcellus (domestic guinea pig): 100723839
Entry
100723839         CDS       T07777                                 
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013  Nucleocytoplasmic transport
cpoc03015  mRNA surveillance pathway
cpoc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100723839 (Ddx39b)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100723839 (Ddx39b)
   03015 mRNA surveillance pathway
    100723839 (Ddx39b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpoc03019]
    100723839 (Ddx39b)
   03041 Spliceosome [BR:cpoc03041]
    100723839 (Ddx39b)
Enzymes [BR:cpoc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100723839 (Ddx39b)
Messenger RNA biogenesis [BR:cpoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100723839 (Ddx39b)
Spliceosome [BR:cpoc03041]
 Complex C
  Other components
   EJC/TREX
    100723839 (Ddx39b)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100723839 (Ddx39b)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 100723839
NCBI-ProteinID: XP_003474035
Ensembl: ENSCPOG00000002335
UniProt: H0UYB6
LinkDB
Position
Unknown
AA seq 428 aa
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagagaatgatgtggacaatgagctcttggactatgaagacgatgaggtggagacg
gcagctgggggagatggggccgaggcccctgccaagaaggatgtcaagggctcttacgtc
tccatccatagctctggtttccgcgactttctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccctcagaagtccagcatgagtgcatccctcaggccatt
ctaggcatggatgtcctgtgtcaggccaaatcaggcatgggaaagacagcagtgtttgtc
ttggccacactgcagcagctggagccagtgaccgggcaggtgtccgtactggtgatgtgt
cacactagggagttggcttttcagatcagcaaggagtacgagcgcttctctaaatacatg
cccaatgtcaaggtggctgtgtttttcggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccccacattgtcgtgggaactcctggccgcattcttgccctggct
cgaaacaagagcctcaacctcaagcacattaaacacttcatcctggatgagtgcgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccgcac
gagaagcaggtcatgatgttcagtgctaccctgggcaaagagattcgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggacgatgagaccaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttggatgttcttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgc
atcgccctggcccagctgctggtggagcagaacttcccggccatcgccatccaccgcggg
atgccccaggaggagaggctctctcggtatcagcagtttaaggactttcagcggcggatt
ctcgtggctaccaacctgttcggccggggcatggacattgagcgggtcaacatcgccttc
aactatgacatgcccgaggactcggacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgttcgtgtcggacgagaacgatgccaagatcctc
aatgacgtgcaggaccgctttgaggtcaacatcagcgagctgccggacgagatcgacatc
tcctcctacattgaacagactcggtag

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