Cavia porcellus (domestic guinea pig): 100724550
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Entry
100724550 CDS
T07777
Symbol
Prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc04120
Ubiquitin mediated proteolysis
cpoc04137
Mitophagy - animal
cpoc04141
Protein processing in endoplasmic reticulum
cpoc05012
Parkinson disease
cpoc05014
Amyotrophic lateral sclerosis
cpoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100724550 (Prkn)
04120 Ubiquitin mediated proteolysis
100724550 (Prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100724550 (Prkn)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
100724550 (Prkn)
05014 Amyotrophic lateral sclerosis
100724550 (Prkn)
05022 Pathways of neurodegeneration - multiple diseases
100724550 (Prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoc04131
]
100724550 (Prkn)
04121 Ubiquitin system [BR:
cpoc04121
]
100724550 (Prkn)
03029 Mitochondrial biogenesis [BR:
cpoc03029
]
100724550 (Prkn)
Enzymes [BR:
cpoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100724550 (Prkn)
Membrane trafficking [BR:
cpoc04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100724550 (Prkn)
Aggrephagy
Other aggrephagy associated proteins
100724550 (Prkn)
Xenophagy
Other xenophagy associated proteins
100724550 (Prkn)
Ubiquitin system [BR:
cpoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100724550 (Prkn)
Mitochondrial biogenesis [BR:
cpoc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100724550 (Prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
100724550
NCBI-ProteinID:
XP_023419372
Ensembl:
ENSCPOG00000006136
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVNSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELWNDLTVQNCD
LEQQSIVHIVQRPGKKNAETNSAGGDKTRNTLGSSSREPMSLTRVDLSSSVLPADSVGLA
VVLDTESRNDSAVVRSPGRTTYNSFYVYCKVPCQRVQPGKLRVQCGTCKQATLTLAQGPS
CWEDVLIPNRMSGKCQSPGCPGTTAEFFFKCGAHPTSDQDTSVALNLITTNSRNITCITC
TDIRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDPELGYSLPCVASCPSAVYKEL
HHFTLLGHQQYNRYQRYGAEECVLQMGGVLCPHPGCGAGLLPEQGQKKITCEAINNLGCG
FVFCRDCKEAYHEGECSALCEASGPGIQPYRVDERAAEQARWEEASKETIKKTTKPCPRC
SVPVEKNGGCMHMKCPQPQCRLEWCWTCGCEWNRTCMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtccgattcaactccagtcatggtttcccagtggaggtcaattctgat
accagcatcttccagctcaaagaagtggttgctaagcgacagggggttccagctgaccag
ctgcgtgtgatttttgcggggaaggagctttggaatgacttgacagtgcagaactgtgat
ctggagcaacagagcatcgttcacattgtgcagagaccaggaaagaaaaatgcagaaaca
aattcagctggaggagacaagaccagaaacactttgggatcctcttccagagagcccatg
agcttgacccgggtggacctcagcagctccgtcctgccagcagactccgtgggcctggct
gtcgttctggacactgagagcaggaatgattcagcggtggtcagaagcccaggtagaaca
acatacaacagcttctatgtttattgcaaagtcccctgtcaaagggtacagccaggaaag
cttcgggtacagtgtggcacctgcaaacaagctaccctcactttggcccagggtccatct
tgctgggaagatgtcttgattccaaaccggatgagtggtaaatgccaatctccaggctgc
cctgggaccacagcagaatttttctttaagtgtggagcacacccaacctcagaccaggac
acatctgtggctttgaacctaataacaaccaacagccgaaacatcacttgcataacatgc
acagacatcagaagccctgtcctggttttccagtgtaaccatcgtcacgtgatttgctta
gactgtttccacttgtactgtgtgaccagactcaatgatcggcagtttgttcatgaccct
gagcttggctactccttgccgtgtgtggcgtcttgcccatcagcagtttataaagaattg
caccattttaccctactaggacaccagcagtataaccgctaccagcggtatggtgctgag
gagtgtgtgctgcagatgggcggtgtgctgtgccctcaccctggctgcggagcagggctg
ctacctgagcagggtcagaagaaaatcacgtgtgaagccatcaacaacctcggctgtggg
tttgtcttttgccgggattgcaaggaagcgtatcatgaaggagaatgcagcgccctctgt
gaagcctcaggacctggtattcagccctacagagttgatgagagagctgctgagcaagca
cgctgggaagaggcctccaaggaaaccatcaagaaaaccaccaagccctgccctcgctgc
agtgtgccagttgagaaaaatggaggatgcatgcacatgaagtgtcctcagccccagtgc
agactcgagtggtgctggacctgtggctgcgaatggaaccgcacctgcatgggtgaccac
tggttcgatgtgtag
DBGET
integrated database retrieval system
