Cavia porcellus (domestic guinea pig): 100724694
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Entry
100724694 CDS
T07777
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013
Nucleocytoplasmic transport
cpoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100724694 (Upf3a)
03015 mRNA surveillance pathway
100724694 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100724694 (Upf3a)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100724694 (Upf3a)
mRNA cycle factors
P-body specific factors
100724694 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF2589
Motif
Other DBs
NCBI-GeneID:
100724694
NCBI-ProteinID:
XP_005007180
Ensembl:
ENSCPOG00000006824
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MRSEETSRGLGAAVTARSPGGQEKLSAAEAQFLRESPWRDPQTPPALSFISEGGIVKPRE
EKTALRKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVAGADLSLYPYLYSRAYINFRNPD
DILLFRDRFDGYVFMGSKGVEYPAVVEFAPFQKVVKKKLKKRDAKIGSIEDDPEYKQFLE
TYSMEEERTSANPELLLEEIEAKTRELVARRTTPLLDYIKNRKLEKQRIREEKREERRRR
ELEKKRLREEEKRKRREEERYKRKEADKQKITVETEMRIKLLKKPEHEEEPDTEKQKEKG
EEVSIEGGKQETCALCTFVRARPSEKPVGACKEKSQDDNDKEQKDLERRIQGLEMPECYS
DDGRKHSGHSEFDRFPRRNDDELRWGKRIHPRQREDGEPGEGHPSEDSREPEQEAAGVLQ
PGIWKGVPRK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcggaggagacttctagaggcttaggcgcggcggttactgctcgtagtccaggc
ggacaggagaagctatcggccgcggaggcccagttcctccgggaatctccttggcgagat
cctcagacaccgccagctttgtcctttatctctgaaggcgggatcgtgaaacctcgcgag
gagaagacggcgctgagaaaggtggtcctgcggcggctgcctccaggcctcacgaaggag
cagctggaggagcagctgcgcccgctgcccgcgcacgactacttcgaggtggctggcgcg
gacctcagcctttatccatatctctactcaagagcatacattaattttaggaatcccgat
gacatccttctgttcagagatcgttttgatggatatgtctttatgggcagtaaaggcgtg
gagtatcctgccgtggtagagtttgccccattccagaaggtagtcaagaagaagctgaaa
aagagagatgccaagatagggagcatcgaagatgatccagagtataagcagtttttagaa
acttacagcatggaagaggaaagaaccagtgccaatcctgaacttcttctggaagagata
gaggcaaagacaagagaacttgttgctagaaggaccacacctctattggactatattaaa
aacagaaaattagaaaagcagagaattcgagaggagaagcgggaagagcgaaggaggagg
gagttagaaaagaaacgtttgcgggaggaggaaaaaagaaaaagacgagaagaagaaagg
tacaagaggaaagaggcagataaacaaaagataacggttgagacagaaatgaggattaag
cttcttaagaaaccagaacacgaagaagaaccagacacagaaaagcaaaaagaaaaaggt
gaagaagtcagcattgaaggtggaaaacaggaaacttgtgccctctgtacttttgtgaga
gccaggccctcagagaaaccagtgggggcatgtaaggagaagtcacaggatgacaatgac
aaagagcagaaagacttggagagaagaatccaaggacttgaaatgccagaatgctactca
gatgatggcagaaagcacagtggtcactctgagtttgacaggtttcctagaaggaatgac
gatgaactgagatgggggaagaggattcacccaagacagagggaagacggggagccagga
gaagggcatccctctgaagacagcagagagcctgaacaggaagcagcaggggttttacag
cctggcatctggaagggagtgcccaggaaatag
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