Cavia porcellus (domestic guinea pig): 100725043
Help
Entry
100725043 CDS
T07777
Symbol
Msh6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc01524
Platinum drug resistance
cpoc03430
Mismatch repair
cpoc05200
Pathways in cancer
cpoc05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100725043 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100725043 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
100725043 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100725043 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpoc03400
]
100725043 (Msh6)
DNA repair and recombination proteins [BR:
cpoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100725043 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
100725043
NCBI-ProteinID:
XP_003473125
Ensembl:
ENSCPOG00000000931
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKGPARSSREGGSGAARGASPCSGGDAARRDAGPGPQPTA
ASVSPPEGKNLNGGLRRSTAPAASASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTCI
REKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKDAQKGGHFYSSKPEILRAMQRAD
EALNKNKTERLELAVCDEPSEPEEEMEVGATYASEKSEEDNEIESEEEVRPKMQGSRRSS
RQVKKRRVMSDSESDIGGSDVEFKPDTKEEGSSDEISSGAGDSESEGLDSPVKAAPKRKK
MGIGKIGFKKNSSRKETPSVTKRATGILSETKNTSSAFSVPQNSESQAQGSGGGDDSCGP
TVWYHETLEWLKKEKRRDEHRRRPDHPDFDPSTLYVPEDFLNSCTPGMRKWWQIKSQNFD
LVIFYKVGKFYELYHMDALVGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVAR
VEQTETPEMMEARCRKMAHISKYDKVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSL
KEKEDSSGHVRLYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSV
ETKTILKGTLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTEKLNEDTGVMLPSVLKGMT
SESDSIGLTPGENSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSVRPGA
IFTKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDTCYTPFGKRLLKQWLCAPLCS
PFAINDRLDAVEDLMDVPDKISEVTDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIM
YEETTYSKKKIIDFLSALEGFKVMCKIIEIMEEVVDGFKSKILKQVVTLQIKNPEGRFPD
LTTELNRWDTAFDHEKARRTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRIGC
RTIVYWGIGRNRYQLEIPENFTIHNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEER
RDVSLKDCMRRLFYNFDKNYKDWQCAVECIAVLDVLLCLANYSQGGDGPMCRPALLLPGE
HNPPFLELRGSRHPCITKTFFGDDFIPNDILIGCEEQQEDGRAYCVLVTGPNMGGKSTLI
RQAGLLAVMAQMGCYVPAEMCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHA
TAHSLVLVDELGRGTATFDGTAIASAVVKELAETIRCRTLFSTHYHSLVEDYSKNVAVRL
GHMACMVENECEDPSQETITFLYKFVQGACPKSYGFNAARLAHLPEEVIQKGHRKAREFE
KMNQSLRLFREVCLASERSSIDAEALHKLLTLIK
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagtactctgtacagcttcttccccaagtctccggcgttaaacaatgcc
aacaagggcccagctaggtcctcgcgcgaaggcggcagcggcgcggcccgcggggcctcc
ccctgttctggcggcgatgcggcccggagagacgctgggcctgggccccagcctacggcg
gcctccgtgtcgccgcccgagggcaagaacctgaacggagggctgcggcggtcgacagct
cctgcggcctccgctagttcctgtgacttctcaccaggtgatttggtctgggccaagatg
gagggctacccctggtggccttgcctggtttacaaccacccctttgatggaacatgcatc
cgtgagaaagggaagtcagttcgggttcatgtacagttttttgatgacagcccaacaagg
ggctgggttagcaaaaggctgctaaaaccctacacaggttcaaaatctaaggacgcccag
aagggaggtcacttttatagttcaaagcctgagatactcagagcaatgcaacgtgcagat
gaagccttaaataaaaacaagactgaaagactggagttggcagtgtgtgatgagccctca
gagccagaagaagagatggaggtaggtgcaacttatgcatcagagaagagtgaagaagat
aatgaaattgagagtgaagaagaagtgcggcctaagatgcaaggatctaggagaagtagt
cgtcaagtaaaaaaaagaagggtcatgtcagactctgagagtgacattggtggctctgat
gtggaattcaagccagacactaaggaggaaggaagcagtgatgagataagcagtggagct
ggggacagtgagagcgaaggcttggacagccctgtcaaagctgctccaaagcggaagaaa
atgggaattggaaagattggttttaaaaagaatagttcaaggaaggaaacaccttcagtt
accaagcgagcgactggcattttatcagagaccaaaaatacttcgagtgctttctctgtc
cctcaaaattctgaatctcaagcccaaggtagtggaggaggtgatgacagttgtggcccg
actgtctggtatcatgaaactttagaatggctgaagaaggaaaagagaagagatgagcac
aggaggcgccctgatcaccctgattttgatccatccacactttatgtgcctgaagatttc
cttaattcgtgtactcctggtatgaggaagtggtggcagattaagtctcagaactttgat
cttgtcatcttttataaagtagggaaattttatgaactgtaccatatggatgctcttgtt
ggagtcagtgaactggggctggtatttatgaaaggcaactgggcccattctggttttcct
gaaatagcatttggccgatactctgattcccttgtgcagaaaggctataaagtagcacga
gtggaacaaactgaaacaccggaaatgatggaggcacggtgcagaaagatggcacatata
tctaagtatgacaaggtggtgcggagagagatttgtaggatcattaccaagggtacacag
acctatagtgtgcttgaaggtgacccttctgagaactatagtaaatatcttcttagcctc
aaagaaaaagaagattcttctggccacgttcgactatatggtgtgtgctttgttgacact
tcactgggaaagtttttcataggtcagttttcagacgatcgccattgttcaagatttagg
actcttgtggcacactatcctccagtacaagtcttgtttgagaaaggaaatctctcagtg
gaaactaagacaattctgaaaggaacattatcctcttctcttcaggaaggtctgatacca
ggctcccaattttgggatgcagccaagactttgcgaactcttcttgaagaagggtacttt
actgaaaagctaaatgaggacactggggtgatgttaccctcggtgcttaaaggtatgacc
tcagagtccgattccattgggttgacaccaggagagaacagtgaactggctctctctgct
ctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagcttttatcaatg
gctaattttgaagaatacatacctttggattctgacatggtcagtgtaagacctggtgct
atttttactaaagccaatcaacgaatggtgctagatgcagtgacattaaacaatttagag
atttttctgaatgggaccaatggttctactgaagggaccctgttagagaggattgatact
tgctatactccctttggtaagcggctcctaaagcagtggctttgtgccccactctgtagt
ccttttgctatcaatgatcgcttagatgcagtggaagatctcatggatgtgcctgacaaa
atctctgaagttacagaccttctaaaaaagcttccagatcttgagaggttattgagtaaa
attcataatgttggttctcctctaaagagccagaaccaccctgatagtagagctataatg
tatgaggaaactacatacagcaagaaaaagatcattgattttctttcagccctagaaggc
ttcaaagtaatgtgtaaaattatagagattatggaagaagttgttgatggttttaagtct
aaaattcttaagcaagtagttactcttcagatcaaaaatcctgaaggacgctttcctgat
ttgactacagaactgaatcgatgggatacagcctttgaccatgaaaaggctcgaaggact
ggactgataactcccaaagcaggatttgattctgattatgatcaagctcttgctgacata
agagaaaatgaacagagcctcctagagtacctagacaaacagcgcagtcgaattggctgt
aggactatagtctactgggggattggtagaaaccgttaccagttagaaattccagagaat
ttcaccatccataatttaccagaagaatatgaactgaagtctaccaaaaagggctgtaaa
cgatactggaccaaaactattgagaagaagttggctaacctgataaatgctgaggaacgt
agagatgtgtcactgaaggactgcatgcggcgactgttctataactttgacaaaaattac
aaggactggcaatgtgctgttgagtgcatcgcggtgttggatgtcttactgtgccttgct
aactacagtcaagggggtgatggtcctatgtgtcgcccagcacttctgttaccaggagaa
cacaatccacctttcttagagcttagaggatcacgacacccctgtatcacaaagactttt
tttggggatgattttattcctaatgacatcctcataggctgtgaagaacaacaggaagac
ggcagagcctattgtgtgcttgttactggaccaaatatggggggcaagtctacactcata
agacaggctggcctgttggctgtaatggcccagatgggctgttacgtccctgcggaaatg
tgcaggctcacaccagttgatagagtgtttactagacttggtgcctcagatagaataatg
tctggtgaaagtacattttttgttgaattgagtgaaaccgccagcatacttaggcatgca
acagcacattctctggtgcttgtggatgaattaggaagaggtactgccacatttgacggg
acagcaatagcaagtgcagttgttaaagaacttgctgagaccataaggtgtcgcacattg
ttttctacccactaccattcattagtagaggattattctaagaacgttgctgtgcgccta
ggacatatggcatgcatggtagaaaatgaatgtgaggatcccagtcaggagactattacc
ttcctttataaatttgttcaaggagcttgtcctaagagctatggctttaatgcagcaaga
cttgctcatctcccagaagaagttattcaaaagggacatagaaaagcaagagaatttgag
aagatgaatcagtcactacgactatttcgggaagtctgcctggctagtgaaaggtcgtct
atagatgctgaagcactccataagttgctgactttgattaagtaa
DBGET
integrated database retrieval system
