Cavia porcellus (domestic guinea pig): 100727035
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Entry
100727035 CDS
T07777
Symbol
Trim56
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpoc04121
]
100727035 (Trim56)
Enzymes [BR:
cpoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100727035 (Trim56)
Ubiquitin system [BR:
cpoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100727035 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-RING_4
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
100727035
NCBI-ProteinID:
XP_005003741
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MVSQGSSPSLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDCLAQLAESGHVRCPECR
EMVPVPPAGVAAFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSAGGXVTARC
LDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
CQPCSQLLCRECRLDPHLDHPCLPLAEAVSARRPGLEELLAGVDSHLVELETSRVVEKEA
LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAKLEDKEQ
VAKAAAAFARRVLSLGREAEILSLEGAITQRLQQLQGCPWTPGPAPCLLPQLELHPGLLD
KNCHLLRLSFEEQQTEKDSGKDGAGTQGGSENQNLQEVGAKPEGQSGAQPQHRDGALSPK
EDKAQLPQEDAGPQLERGGRSNKKKKFKGRCKSISREPSPALGPNLDGSGLLPRPVFYCT
FPIRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLSGDYKGTVPVPEGCSPCSVA
ALQNAVAFSAGARLYLISPSGEVQWRRALSLGQASHAVTALPGKDRVAVSVAGHVEVYNM
EGSLATRFIPGGKASRGQRALVFLTASPQGNFVGSDWQQNSVVVCDGLGQVIGEYKGPGL
HGCQPGSLSVDKKGYIFLTIREVNKVVILDPKGSLLGDFLTAFHGLEKPRVTTMVDGRYL
VVSLSNGTIHVFRVRSPDS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccagggctcctcaccctccctgctggaggccctaagcagtgactttctggcc
tgtaaaatctgcctggagcagctgcacacgcccaagaccctgccctgcctgcacacctac
tgccaggactgcctggcccagctggctgagagcggccatgtccgctgccctgagtgccga
gagatggtgcctgtgcctcctgccggagtggctgcctttaagaccaacttctttgtcaat
gggcttctggacctggtgaaggcccgggcctgcggggacctgcgtgcaggaaagccagcc
tgtgctctatgtcctctggtgggtggcaccagtgctggggggncagtcacagcccgatgc
ttggactgtgccgatgacctctgccaggcctgtgctgatgggcatcgctgtacccgccaa
acccacacccaccgcgtggtggacctggtgggctacagggcagggtggtacgatgaagag
gcccgggagcgccaggcagcccagtgtccccagcaccctggggaggccctgcgcttcctg
tgccagccctgctcccagctgctgtgccgtgaatgccgcctcgacccccacctggaccac
ccctgcctccccctggcggaggcagtcagtgcccggagacccggcctggaggagctgctg
gcaggtgtggacagccacctggtggagctggagaccagtcgggtggtggaaaaggaagct
ctggcccgactgcgggagcaggctgccagagtagggacacaggtggaggaggcggcggag
ggagtcctccgggccctgctggcccagaagcaggaggtgctgggacagctgcgggcccat
gtggaggctgctgaggaggctgcccgggagaggctggccaagctagaggacaaggaacag
gtggccaaggcagcagctgcctttgcccggcgagtgctcagcctggggcgagaggctgag
atactctcgctggagggagcgatcacccagagactccagcagctgcagggctgtccctgg
actccagggccagccccctgcttgctgccccagctcgagctccaccccgggctcctggac
aagaactgccatcttctgcggctgtcttttgaggagcagcagacggagaaggacagtggg
aaagatggagcgggaacccagggagggtctgaaaaccaaaacctgcaagaggttggagcc
aagccagaggggcagagcggagcccagccccagcatagggatggagccctatccccaaaa
gaggacaaagcccagttgccccaggaagatgcaggaccccagttggagaggggtggcaga
tccaacaagaagaaaaagttcaaaggcaggtgcaaatccatctcccgcgagcccagccct
gcgctggggccaaacctggatggctcaggcctcctccccaggcccgtcttttactgcacc
ttccccattcggatgcctggagacaagcggtctcctcgaatcactgggctgtgtcccttc
ggccccagggagatcctggtagcagatgagcagaacagggcactgaaacgcttttccctc
agtggcgactacaagggcacggtgccggtccctgagggctgctccccatgcagcgtggcg
gccctccaaaatgctgtggctttctcggctggagcgaggctctatcttatcagccccagt
ggtgaggtgcagtggcgtcgcgccttgagccttggccaggccagccatgcggtgactgcg
ctgcccggcaaggatcgcgtggctgtcagtgtggcgggccacgtggaagtatataacatg
gaaggcagcctggccacccggttcatccctgggggcaaggccagccggggccagcgggca
ctggtgttcctgacagccagcccccagggcaatttcgtggggtctgactggcagcagaat
agtgtggtggtctgtgacgggctgggtcaggtgattggggagtacaaggggccaggcctg
catggctgccagccagggtccctgtctgtggataagaagggctacatctttctgaccatc
cgagaggtcaacaaggtggtgattctggacccaaaggggtcacttctgggcgacttcctg
acagccttccatggcctagaaaagccccgggtgactaccatggtagacggcaggtacctg
gttgtgtctctcagtaatgggaccatccatgtctttcgggtccgttcccctgacagttag
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integrated database retrieval system
