Cavia porcellus (domestic guinea pig): 100728141
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Entry
100728141 CDS
T07777
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100728141 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoc03021
]
100728141 (Polr1a)
Enzymes [BR:
cpoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100728141 (Polr1a)
Transcription machinery [BR:
cpoc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100728141 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF1639
Motif
Other DBs
NCBI-GeneID:
100728141
NCBI-ProteinID:
XP_013006968
Ensembl:
ENSCPOG00000012350
UniProt:
H0VL87
LinkDB
All DBs
Position
Unknown
AA seq
1711 aa
AA seq
DB search
MLGSKNIPWRRLQGISFGMYSAEELRKLSVKSITNPQYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILTTFLEENADPSSFEIQEELEQYTTKIVQNNLLGAQGAH
VKNVCESRSKLITYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPTMVHKKPDQKDT
EGLAPGIEEAQMGKRGYLTPSSAREHLGAIWKNEGFFLNYLFLGLDDVGMKSRFNPSVFF
LDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQQLPTDVEAL
TDEQKDPLVAVDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKFPGIRQ
ILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQE
LRQAVINGPNVHPGASMVINEDGSRTALSTGDIAQREAVAKQLLTPATGAPKPQGTKIVC
RHVKNGDILLLNRQPTLHRPSIQAHLARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMELVYR
GLTDRVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYIPLNLIGKAKIPGKAWVQE
TPRPVPNFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLT
CLARLFTAYLQLYRGFTLGMEDILVKPKADEKRHQIIEESTQCGPQAVRAALNLPDTASC
DEVRDKWQDAHLGKDQRDFNVIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI
KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY
GEDGLDIPKTPFLQPKQFPFLASNYEVIVKSKHLHEVLSRGESQKALRHFRAIKKWHSKH
SSALPRRGAFLSYSQKIQAAVRALNLEGNNQNGRSPETQQMLQMWYELDEQSRRKYEKKA
ASCPDPSLSVWRPDIYLASVSETFEKKVDDYCQEWAAGAEKSYKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTRRALKRVKTLKKQLTRVCLGEVLQKIDVEESFSMGEKQNKFRVYQLRFH
FLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIRKKQSKASALRSVNTRRATQRDLDDA
GESRRTRGEQEGDEEDEENIVDAEADEGDADASDTKCKAKQEEEVDYESEEEEEKEEEED
DDAQEDGNIHPEDANQVQEPDEEEGSGPEEDLPQKPPCRRREPQGAEAVERRVQVVREAH
SFIEDYQYDTEEGLWCQVTLKLPLMKINFDMSSLVVSLAHSAVVYTTKGITRCLLNETTN
SKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVF
AVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIKSSSSPLQQMTFETSFQFLKQATMMGS
HDELKSPSACLMVGKVVKGGTGLFELKQPLR
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgttaggctccaagaacattccctggcggcggctgcagggcatttccttcggaatgtat
tcggctgaagagctcaggaaattaagtgttaaatccatcacaaatccacagtacttggac
agcctgggaaacccatcagcaaatggtctctatgatttagcattgggccctgcggattcc
aaagaagtgtgctccacctgtgtacaagatttcaacaattgttctgggcatctgggccac
attgaactcccactcacagtatacaaccctctcctctttgataaactctacctgctgctc
cgaggttcctgtttaaactgccacatgctgacctgtccccgggctgtgattcacctcctt
gtttgccagttgagggttctggaagttggggccctacaagcagtctatgagctggaacga
attttgaccacgtttttggaagaaaatgctgatccttcttcctttgaaattcaagaagaa
ttagagcaatacacaaccaaaattgtgcagaacaacctcttgggagcgcaaggtgcacac
gtgaagaatgtgtgtgagagcaggagcaaactcatcacttacttctggaaggcacatatg
acagctaagagatgtccccactgcaagactgggcggtcagttgtccgaaaggagcacaac
agcaagctgacagtcacatatccaaccatggtgcacaagaagcctgaccagaaggacaca
gaaggcctggctccaggaattgaggaagctcagatgggaaaaagaggatacctgacaccc
agcagtgcccgggaacatcttggtgccatttggaagaatgaaggattctttctaaattac
ctctttttgggactggatgatgttggcatgaagtccagattcaaccccagtgtgttcttt
ctggatttcctagtggtgccgccctccaggtatcgccctgtcaatcgccttggggaccag
atgtttaccaatggccagacagtgaacttgcaagctgtcatgaaggacatagttctgatc
cggaagcttctggcactgatggcccaagaacaacagcttcccactgacgtggaagcactc
acagatgagcaaaaagaccctttagttgctgtggatcggtcgtttttaagtatgcttcca
ggccagtctctcacagacaaactttacaacatttggattcgccttcagagccacgttaat
attgtgttcgatagtgagatggacaaactaatgatggaaaagttccctggcattagacag
atcctggagaagaaggaaggcctgtttcgaaagcacatgatggggaagcgagtagactat
gcggcccgctcggtcatctgcccggacatgtacatcaacaccaatgaaatcgggattccc
atggtgtttgccacaaaactgacctaccctcagccagtgaccccctggaacgtccaggaa
ctgaggcaggcagtcatcaatggcccaaatgtacaccccggagcctccatggtcatcaac
gaggatggcagccgcacagccctgagcaccggggacatagcccagcgcgaagcagtggcc
aaacagctcctgacaccagccacaggggcacctaagccccaggggacaaaaattgtgtgc
cgccacgtgaagaatggggacattctcctgctaaaccgacaacccaccctgcacagacct
tccatccaggcccatcttgcccgtatcctgcctgaagaaaaagtcctacggctgcactat
gccaactgcaaggcctacaacgctgacttcgatggagacgagatgaatgcccatttcccc
cagagtgagctgggccgggcagaggcctatgttttggcctgcactgatcagcagtacctt
gttcccaaggatgggcaaccgttggcaggactgatccaagaccacatggtttcaggtgca
aacatgacaattcgaggttgctttttcaaccgggagcagtatatggagctcgtgtaccga
ggactcacggacagagtggggcgcgtgaagctctttcctcctgccatcctgaagcctttt
ccactgtggacaggaaagcaggttgtgtctacactgctgataaacataatcccagaggac
tatatcccactgaacttaatcggaaaagcaaaaatccccgggaaagcctgggtgcaggaa
actccgcgacctgttcccaactttaacccggactcaatgtgcgagtctcaggtgatcatc
agggagggggagctgctgtgtggagtgctggacaaggcgcactatgggagctccgcctat
ggcctggtccactgctgctatgagatctacgggggcgagaccagcggcagggtcctcacc
tgcctagctcgcctgttcacggcctatctgcagctctacagaggcttcaccttgggcatg
gaagacattttggtgaagccaaaggcagatgagaagagacatcagatcattgaagaatcc
acccagtgtgggccccaagctgtcagggctgcattaaacctgccagacactgcatcatgt
gatgaggtccgcgacaaatggcaggatgcccatctgggcaaagaccagagggattttaat
gtgattgatatgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggca
tgcatgcctttcggcctgcacagacagttcccagagaacaacctgcagatgatggtgcag
tcgggagccaaaggttcaactgtaaacacaatgcagatttcatgcctgctgggccagatt
gaactggaaggtcggagacccccactgatggcatctggcaagtcactgccctgcttcgag
ccttatgaattcactcctagggctggtggcttcgtcactggaaggtttctcaccggcatt
aagcctcctgagttcttctttcactgcatggcagggcgagaaggcctggtggacacagcc
gtgaaaaccagccgctctggctatcttcaaaggtgcatcatcaagcatctggaggggctg
gttgtccagtatgatctgacggtccgagacagtgacggcagtgtggtgcagttcctgtat
ggggaggacggcctggacatccccaagacaccgttcctacagcccaagcagttccccttc
ctggccagcaactatgaggtaatagtgaaatccaagcatctccatgaagttctgtccaga
ggagaatcccagaaagctctccgccacttcagagccatcaaaaaatggcatagcaagcat
tccagtgccctgccgaggagaggtgccttcctgagttattcccagaagattcaggcagca
gtgagagccctaaaccttgagggcaacaaccagaatgggcgcagcccagagactcagcag
atgttgcagatgtggtatgagttggatgagcagagccgtcggaaatatgagaagaaagca
gcctcttgtcctgaccccagtctgtctgtctggcgtccagacatctacttagcctctgtg
tcagaaacatttgaaaaaaaagttgatgactactgccaagagtgggcagccggagcagag
aagagttacaaatcagagctttctctagacaggctgaggaccctgctgcagctgaagtgg
cagcgctcactgtgtgacccaggcgaggctgtgggtctactggctgcccagagcatcggg
gagccctccacacagatgaccctgaacaccttccactttgcaggcagaggcgagatgaat
gtcactctgggcattcccaggttgagggagattctcatggtggccagtgccaacatcaag
acacctatgatgagtgtgcctgtgttcaacaccaggagggccctgaagagagtgaagacc
ctgaagaagcagctcactagagtgtgcctgggagaggtgttgcagaaaattgatgttgag
gagtccttctctatgggggaaaagcagaacaaattccgggtgtaccagctgcggtttcac
ttcctgccacatgcatattaccagcaggagaagtgtctaagacccgaagacatcctgcac
ttcatggaaacaaggttctttaaacttctgatggaatccatcaggaagaagcagagtaaa
gcatcagccctccgaagcgtgaacactcggagagctacacagcgagatctcgatgatgct
ggagaatcgcggaggacccggggagagcaggaaggcgatgaggaagatgaggagaacatc
gtggatgccgaagctgacgagggggatgccgatgcctctgacacaaaatgcaaggcgaag
caagaggaagaggtggactacgagagtgaagaagaggaggagaaggaggaagaggaagat
gatgatgcacaggaagatgggaacatccatcctgaagatgccaaccaggtccaagaacca
gatgaggaggagggctcgggccccgaggaggacttaccccagaaacctccctgccgccgc
cgggagccccagggagccgaggctgtggagcgccgagtccaggttgtgcgtgaggcccac
tcgttcattgaggactaccagtatgacaccgaggagggcctgtggtgccaggtgacgctg
aagctccctctgatgaaaattaactttgacatgagttccctcgtcgtgtccttggcccac
agcgctgtcgtctacacgaccaagggcatcactcggtgcctgctgaatgagaccaccaac
agtaagaacgagaaggagctcgtgctgaacacagaaggaatcaacctcccagagctgttc
aagtattccgaggtgctggacctgcgccgactctattccaatgacatccacgccatggcc
agcacatacggcatcgaggccgctctgcgggtgatcgagaaggagatcaaggatgtgttc
gccgtgtacggcattgcagtggatcctcgccatctgtccctggttgccgattatatgtgc
tttgagggtgtttacaagccactgaatcgctttgggatcaagtcaagctcctctcctctg
cagcagatgacgtttgagaccagcttccagtttctgaagcaggccaccatgatgggatcc
cacgatgagctgaagtccccttcagcctgcctcatggtcgggaaggtcgtcaagggcgga
acaggactgtttgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
