Cavia porcellus (domestic guinea pig): 100728874
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Entry
100728874 CDS
T07777
Symbol
Upf3b
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013
Nucleocytoplasmic transport
cpoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100728874 (Upf3b)
03015 mRNA surveillance pathway
100728874 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100728874 (Upf3b)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100728874 (Upf3b)
mRNA cycle factors
P-body specific factors
100728874 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
100728874
NCBI-ProteinID:
XP_005002317
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MKEEKEHRPKEKRVILLRHQGTSLSSCGASGDSTKEQDRQNHNKXEALSKVIIXILPPTL
TKEQLXGNLQPVPEHDYFEFFPNDTSVYPHXINFKNQESIILFRDXFDRCVFLENKAQEY
LAIVEFAPFQKATKKKPKKRDTKVGTTDDDPEFRIFXXSCATDNEKMTSIPETLLEEIKA
KNREIKAKKTTPLLSFLKNKQRREEKREERRQXEIERKKTDQEERRKXKEEKHKRQNIEK
LKKVDRVPERGKSKDEPKIKLLKKPERGDEKELDKREKAKKPDHDERASGQSCTLPRTSE
GELEGEKLKRPEGESIRDYSSATDRDRDRDSDRDRGRQRQKRERERERDXEGKKGEPCRQ
KECYDKEKAYKRKEEIXKEKEALPDXGTKNENTESXVTAEKTEKKKEVVKREHIRNKDRL
ARQHYRPGAQSQDQLCAPDDSTKSGDSAVE
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaaggagcacagacctaaagagaaacgagtaatcctgttaaggcaccag
ggcacctcactcagtagctgtggggcttcaggggacagcaccaaagagcaagataggcag
aaccacaataagnaagaggctctcagcaaggtaataatttgaatattacctcctactttg
accaaggagcaactttaaggaaatcttcaacctgtacctgaacatgattattttgagttt
tttcctaatgatactagtgtgtatcctcatnacatcaactttaaaaaccaggagagcatt
attttgttcagggattgatttgatagatgtgtattccttgagaataaagctcaggaatat
cttgctatagtagaatttgcaccttttcaaaaagctacaaaaaagaagcctaagaaaaga
gatactaaagttgggactaccgatgatgatccagaatttagaatattttagtagagttgt
gccacagataatgaaaaaatgacatctattccagagacactgttagaagaaatcaaagct
aaaaacagagaaataaaagctaaaaagacaacaccacttttgagcttcctgaaaaacaag
cagaggagagaagagaaaagggaagaaagaaggcagtgagaaatagaaagaaaaaagaca
gatcaagaagagagaagaaaatagaaagaagaaaaacataaaagacaaaatatagaaaag
ttgaagaaggtagatagagtaccagaaaggggcaaatcaaaggatgaaccaaagattaag
ctgctcaagaagccagaaagaggagatgaaaaagaattggataaaagagaaaaagccaag
aaacccgaccatgatgaaagggccagtgggcagagctgcacactgcccaggacttctgag
ggggagcttgaaggggaaaagctgaagagacctgaaggtgagagtatcagggactacagc
tctgctacagacagagacagggacagagacagtgacagggacagaggcagacagagacag
aagagagagagagagagggagagagactgagagggcaagaaaggggagccctgcaggcag
aaagagtgctatgacaaagagaaggcttataaaagaaaggaagaaatttaaaaagagaaa
gaagcacttccagattaaggaacgaagaatgaaaatacagaatcangagtcacagcagaa
aaaactgaaaagaaaaaggaagtggttaagagagaacacataagaaacaaagatcgcctg
gcaaggcagcattaccgaccaggagctcagagccaagatcaactgtgtgcccctgatgac
agcaccaagtctggagattcagcagtagaa
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