Cavia porcellus (domestic guinea pig): 100728916
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Entry
100728916 CDS
T07777
Symbol
Pabpc4l
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03015
mRNA surveillance pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100728916 (Pabpc4l)
09123 Folding, sorting and degradation
03018 RNA degradation
100728916 (Pabpc4l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100728916 (Pabpc4l)
03041 Spliceosome [BR:
cpoc03041
]
100728916 (Pabpc4l)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100728916 (Pabpc4l)
mRNA cycle factors
Stress granule specific factors
100728916 (Pabpc4l)
Spliceosome [BR:
cpoc03041
]
Complex C
Other components
Complex C specific factors
100728916 (Pabpc4l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RBD_DEAH11
RRM_occluded
RRM_MARF1
RRM_10
RRM_Nup35
RRM_3
Motif
Other DBs
NCBI-GeneID:
100728916
NCBI-ProteinID:
XP_013015531
LinkDB
All DBs
Position
Unknown
AA seq
386 aa
AA seq
DB search
SGPALAEEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRD
VATRRPLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKN
LDRSVDNKTLYEHFSGFGRILSSKVMSDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRD
RQVLVAPFRSRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTD
SSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKR
DGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEEEGQRKGFGLVCFSSPEE
AAKAMTQMNGRVLGSKPLNIALAKRQ
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
tccggccctgcgctcgcagaagaggccggcagcgcccggggcggggaggtgagcgtagcc
gccaagtaccgcctggcctcgctgtacgtgggggacctgcacgcggacgccacggaggac
ctgctcttccgcaagttcagcngcgcggggcccgtgctgtccatccgcatctgcagggac
gtggccacgcggcgcccgctgggctacgcctacgtgaacttcctgcggccggcggacgcg
cagaaggcactggacaccatgaacttcgacgcggtggagggcaaacccatccgcctcatg
tggtcccagcgagacgcctgcttgagaaaatcgggcgtcgggaacgtgatcatcaagaac
ctggacagatcggtggacaacaagaccctgtacgagcacttctcgggcttcggcaggatc
ctgtcctccaaggtgatgagcgatgaccagggatccaagggctacgccttcgtgcacttc
cagagccagagcgcggcggactgcgccatccaggagatgaacggcaaggtgatccgggac
cggcaggtgctggtcgccccgttccggagccgcagggaccgggaagccgagctcagaacc
agaaccagtgagttcaccaacgtgtacgtcaagaacttcggcgaggacatggacgacgag
aggctgcagggtgttttcagcaaatacggcagaaccctcagcgtgaaggtgatgacggat
tccagcggaaaatccaaaggcttcggcttcgtgagcttcgacagccacgaggccgccaag
aaggccgtggaagaaatgaacgggaaggacatcaacgggcagctggtgttcgtgggcaga
gcgcagaagaaagaagagcgccaggccgagctgaagcaggtcttcgaggagctgaagagg
gacggcgcgcgccggtgccagggcgtcaaactctacatcaagaacctggacgacacggtg
gacgatgaccggctgcggagggcgttttcctcatttggctccatcagcagggtcaaggtc
atggaggaagaagggcagcgcaaaggcttcggcttggtgtgcttctcctccccggaggaa
gctgccaaagccatgacccagatgaacggacgcgtcctgggctccaaacccctcaacatc
gccctggccaagcgccagtga
DBGET
integrated database retrieval system
