Cavia porcellus (domestic guinea pig): 100730471
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Entry
100730471 CDS
T07777
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100730471 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100730471 (Edc4)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100730471 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
100730471 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
DUF445
WD40_Prp19
Beta-prop_HPS5
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
100730471
NCBI-ProteinID:
XP_013010381
Ensembl:
ENSCPOG00000019484
UniProt:
A0A286XGN3
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSSAESRRQSTAYNGDLNGLLVPDPLCSGDGTS
ANKPGLRTMPPINLQEKQVICLPGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERILLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLAMVNGKIQEEILVHIRQPEGSPLNHFRRIIWCPF
IPEESEECCEESSPTVALLHEDRAEVWDLDMLRANHSTWPVEVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAEGSHGTGATESTAGVLIKLFCVHTKALQDVQIRFQPQPNPDVVAPLPAHAA
HEDFAFGESRPELGSEGLGSTSHGSQPDVRRIVELPAPADFLNLSSETKPKLMTPDAFMT
PTASLQQITASPSSSSSSSSSSSSSSSSSSSSSLTAVSAVSSTSTVDPPLPRPPEELTLS
PKLQLDGGLTMSSNSSLQGSPRSLLPGLVPGPADKLTSKGSGQVSTAASALSLDLQEVEP
LGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSASESLEPDSMASAASAL
HLLSPRPRPGPELGPQHGLDVGPGDGDRHSTPSLLEAALTQDAATSDSQVWPTAPDITRE
TCSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASASAGFG
TKIPTPRVPAKDWKSKGSPRTSPKLKRKSKKDDGDLSVGTRLTEHQVAEPPEDWPALIWQ
QQRELAELRHSQEELLQRLCTQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQWG
GQLQEQLTQQLSQALSSAVAGRLERTIRDEIKKTVPPCVSRSLEPVAGQLNNSVATKLTA
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKVREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPS
SHLDCHAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcggggggttctagtgctgagagccggcgacaatccactgcctat
aatggggacctcaatgggctcctggtcccagatcccctctgctcaggtgatggtacctca
gcaaacaagcctggtcttcggaccatgccaccgattaacttacaagagaagcaggtcatc
tgcctccctggagatgacagctctacttgcattggcattttggctaaggaggtagagatt
gtggccagcagtgactccagcatttcaagcaaggctcgggggagcaacaaggtgaaaatc
cagcctgttgccaagtatgactgggagcagaagtactactatggtaacttgattgctgtg
tctaactcctttttggcctatgctattcgagctgccaataatggctcagcaatggtgcga
gtgatcagtgtcagcacttcagaacggatcctactcaaaggcttcacaggcagtgtggct
gatctggcctttgcacacctcaactctccacagctggcctgcttggatgaggcgggcaat
ctgtttgtgtggcgtttggctatggttaatggcaaaattcaagaagaaatcttagttcat
atccggcagccagagggctcaccactaaaccacttccgaaggatcatttggtgtcccttc
attcctgaggaaagtgaggagtgctgtgaggaaagcagcccaactgtggccctgctgcat
gaagaccgggctgaggtctgggacctggatatgctccgtgctaaccacagcacctggcct
gtggaggtcagccaaatcaagcagggcttcattgtggtaaaaggccacagcacgtgctta
agtgaaggagccctctcccctgatggaactgtcctggctactgcgagtcatgatggctat
gtcaagttttggcagatctacattgaggggcaagatgagccaaggtgtctacatgaatgg
aagcctcatgatggacggcccctttcttgccttctgttctgtgacaaccataagaaacag
gaccctgaagtccctttctggaggttcctcattactggtgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcctggacctgtctgcagaccattcgcttctccccagatatc
ttcagctcagtgagtgtaccccccagcctcaaggtttgcttggatctctcagcagaatac
ctcattctcagtgatgtacaacggaaggtcctctatgtgatggagttgctgcagaaccag
gaggaaggtcgtgcctgcttcagctccatctcagagttcctgctcactcatccagtgtta
agctttgggatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcctgct
gaggaagagaatgacagcctgggggctgagggttctcatggaactggtgccacggagtcc
acagctggtgtgctcatcaagctcttctgtgtacatactaaggcacttcaagatgttcag
atccgattccagccacaaccgaaccctgatgtggtagctccactccctgctcacgctgcc
catgaggactttgccttcggagagtctcggcctgaactaggttctgagggcttggggtca
acctctcatggctcgcagcctgacgttcgacgaattgtggagctacctgcacctgctgac
ttcttgaacctgagcagtgagaccaagcccaagctgatgacccctgatgccttcatgaca
cccactgcctctctgcagcagatcactgcatctcctagcagcagcagcagcagcagtagc
agcagcagcagtagcagcagcagcagcagcagcagctctcttacagctgtgtctgccgtg
agcagcacctcaactgtggaccctcccttgcccagaccacctgaagagctgaccttgagc
ccaaagctgcagctggatggaggtctgacaatgagcagcaacagcagcctgcaaggaagc
ccgcgcagcctcctgcctggcttggtcccaggtccagctgataaattgacttctaagggg
tctggacaggtatctactgctgcctctgcactgtccctggacctgcaggaagtagagcct
ctggggctccctcaggcttcccccagtcgcacccgctcccctgatgttatttcctcagct
tccactgccctctctcaggatatccctgagattgcgtctgaggccttgtcccgtggcttt
ggttcctctgcttctgagagccttgagccagacagtatggcctcagctgcctcggcacta
cacctactttctccacggccccggccagggcccgagcttggccctcagcatggcctggat
gttggccctggggatggggatcgtcatagtacaccctccctactggaggcagccttgacc
caggacgctgccacctctgatagtcaggtttggcctacagcacctgacattactcgtgag
acctgtagcactctggcagaaagccccaggaatggcctccaagaaaagcacaaaagcttg
gccttccaccgaccaccttatcatctgctgcaacaacatgacagccaggacacaagtgct
gaacaaagtgaccatgatgatgaggtggccagccttgcctctgcctcagcaggctttgga
accaaaattcccactccccgggtgcctgccaaggactggaagtccaaggggtctcctcgt
acttcacccaagctcaaaaggaaaagcaagaaggatgacggggatttaagtgtgggaacc
cggctcacagagcatcaggtggcagagcccccagaggactggccagcactcatttggcag
cagcagagagagctggcagagctacggcacagccaagaagaactactacagcgtttgtgt
actcaacttgaaggcctacagagcactgtcacaggccatgtagaacgtgctcttgagaca
cggcatgagcaggaacagaggcggctagagcgggcattggctgagggacagcagtggggt
gggcagttacaggagcagctgacacagcagctatcccaagcactgtcttcagctgtggct
gggcggctagaacgcaccatacgggatgagatcaagaagacagttcctccatgtgtctcc
aggagtctggagcctgtagctggccagctgaacaattcagtagctacgaagcttacggct
gtggaaggcagtatgaaagagaacatttccaagttgctcaagtccaagaacttgacagat
gccattgcccgagctgctgcagacacattacaggggccaatgcaagctgcctaccgtgaa
gcttttcagagtgtggtactgccagcctttgaaaagagctgtcaggccatgttccagcag
atcaatgatagcttccggctaggcacacaagaatacttacagcagctagagagccacatg
aagagccggaaggtacgggaacaggaagccagggagcctgtgctggcccagcttcggggc
ctggtcagcacactccagagtgccacagagcagatggcggccactgtgtccagcagtgtt
cgggcggaggtgcagcaccagttgcatgtagctgtgggcagcctgcaggagtcaatttta
gcacaggtacagcgtattgttaagggtgaagtgagtgtggcgctcaaggagcagcaggct
gcggtcacctctagcattatgcaggccatgcgctcagctgctggcacgcctgtcccttct
tcccaccttgactgccatgcccagcaagctcatatcctgcagctgctgcaacagggccac
ctcaatcaggccttccagcaggcactgacagccgctgacctgaacctggtgctgtatgta
tgtgaaactgtggacccagcccaggtttttgggcagccaccttgcccactctcccagcct
gtgcttctttccctcatccagcagcttgcatctgaccttggcactagaactgacctcaag
ctcagctacctggaagaggctgtgatgcacctggaccacagtgatcccatcactcgagac
cacatgggctcagtcatggcccaggttcgacagaaactcttccagttcctgcaggctgag
ccacacaactcacttgggaaagcagcccggcgtctcagcctgatgctacatggccttgtg
actcccagtctcccttag
DBGET
integrated database retrieval system
